CX043829

Overview
NameCX043829
Unique NameCX043829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3940 contig Csv1_Contig3940:105..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043829 vs. ExPASy Swiss-Prot
Match: XYL1_ARATH (Alpha-xylosidase OS=Arabidopsis thaliana GN=XYL1 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.928e-64
Identity = 123/182 (67.58%), Postives = 149/182 (81.87%), Query Frame = -1
Query:  249 VTLDAPLHVVNVHLYQNTILPMQQGGLISKEARMTPFSLVVTFPAGASGVQAKGKLYLDEDELPEMKLGNGYSTYVDFFATTGNGTVKIWSEVQEGKFALSKGWIIDSVTVLGLGGSGKASTLEINGSPTNANSKIEFNASEQKHLNSVEDEQ--KSVMVGIKGLGFPVGKNFVMSWKMGIS 788
            VTL APL+ VNVHLYQNTILP QQGGLISK+AR TPFSLV+ FPAGAS   A GKLYLDEDELPEMKLGNG STYVDF+A+ GNGT+K+WS+V+EGKFALSKGW+I+ V+VLGL G+G+ S ++INGSP     KIE ++ E  ++  +EDE+  KSVMV ++GL   VGK+F MSWKMGI+
Sbjct:  736 VTLPAPLNFVNVHLYQNTILPTQQGGLISKDARTTPFSLVIAFPAGASEGYATGKLYLDEDELPEMKLGNGQSTYVDFYASVGNGTMKMWSQVKEGKFALSKGWVIEKVSVLGLRGAGQVSEIQINGSP--MTKKIEVSSKEHTYVIGLEDEEENKSVMVEVRGLEMLVGKDFNMSWKMGIN 915          
BLAST of CX043829 vs. ExPASy Swiss-Prot
Match: AGLU_SPIOL (Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.098e-17
Identity = 61/173 (35.26%), Postives = 87/173 (50.29%), Query Frame = -1
Query:  276 VTLDAPLHVVNVHLYQNTILPMQQGGLISKEARMTPFSLVVTFP-AGASGVQAKGKLYLDEDELPEMKLGNGYSTYVDFFATTGNGTVKIWSEVQEGKFALSKGWIIDSVTVLGLGGSGKASTLEINGSPTNANSKIEFNASEQKHLNSVEDEQKSVMVG-IKGLGFPVGKNF 788
            VTL AP   +NVH+ +  IL MQ   + ++ AR TPF L+V     GAS     G+L+LD+     M +  G  T+V F A +   T  I S+V  G+FA+S+ W+ID VT+LGL    K     ING      +       ++  L S  D +   +V  I GL   +G+ F
Sbjct:  737 VTLSAPPDHINVHIQEGNILAMQGKAMTTQAARKTPFHLLVVMSDCGASF----GELFLDDGVEVTMGVNRGKWTFVKFIAASAKQTCIITSDVVSGEFAVSQKWVIDKVTILGLRKGTK-----INGYTVRTGAVT--RKGDKSKLKSTPDRKGEFIVAEISGLNLLLGREF 898          

HSP 2 Score: 26.1794 bits (56), Expect = 1.098e-17
Identity = 7/23 (30.43%), Postives = 18/23 (78.26%), Query Frame = -2
Query:  779 GSWYNVFDMTQAISSKDGKLLPL 847
            G+W+++FD T+++++  G+ + L
Sbjct:  717 GNWFDLFDYTRSVTASTGRYVTL 739          
BLAST of CX043829 vs. ExPASy Swiss-Prot
Match: AGLU_BETVU (Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  447 YDTSHFIERWEIVTLDAPLHVVNVHLYQNTILPMQQGGLISKEARMTPFSLVVTFPAGASGVQAKGKLYLDEDELPEMKLGN--GYSTYVDFFATTGNGTVKIWSEVQEGKFALSKGWIIDSVTVLGL 824
            Y +S  +     V+L AP   +NVH+++  I+ MQ   + ++ AR TPF L+V     +  V + G+L+LD     EM +G   G  T V FFA +G   + I SEV    +A+S+ W++D +T+LGL
Sbjct:  729 YTSSVSVSAGTYVSLSAPPDHINVHIHEGNIVAMQGEAMTTQAARSTPFHLLVVM---SDHVASTGELFLDNGI--EMDIGGPGGKWTLVRFFAESGINNLTISSEVVNRGYAMSQRWVMDKITILGL 851          
BLAST of CX043829 vs. ExPASy Swiss-Prot
Match: AGLU_HORVU (Alpha-glucosidase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.054e-11
Identity = 56/180 (31.11%), Postives = 80/180 (44.44%), Query Frame = -1
Query:  258 VTLDAPLHVVNVHLYQNTILPMQQGGLISKEARMTPFSLVVTFPAGASGVQAKGKLYLDEDELPEMKLGNGYS-TYVDFFATTGNGTVKIWSEVQEGKFALSKGWIIDSVTVLG--LGGSGKASTLEINGSPTNANSKIEFNASEQKHLNSVEDEQKSVMVGIKGLGFPVGKNFVMSWKM 788
            V L AP   VNVHL   TILP+QQ  L +  AR T F L+V   A A    A G L+LD+ + PE    + +S    ++      G +K+ SEV    +A S+  +I  V ++G     + K  T+ +N +   A+S           L  V          I GL   VG+ F +   M
Sbjct:  707 VRLPAPADTVNVHLTGGTILPLQQSALTTSRARRTAFHLLV---ALAEDGTASGYLFLDDGDSPEYGRRSDWSMVRFNYKIPNNKGAIKVKSEVVHNSYAQSRTLVISKVVLMGHRSPAAPKKLTVHVNSAEVEASSSAGTRYQNAGGLGGV--------AHIGGLSLVVGEEFELKVAM 875          
The following BLAST results are available for this feature:
BLAST of CX043829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
XYL1_ARATH6.928e-6467.58Alpha-xylosidase OS=Arabidopsis thaliana GN=XYL1 P... [more]
AGLU_SPIOL1.098e-1735.26Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1[more]
AGLU_BETVU9.495e-1335.94Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1[more]
AGLU_HORVU3.054e-1131.11Alpha-glucosidase OS=Hordeum vulgare PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13F11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F11-L21-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043829 ID=CX043829; Name=CX043829; organism=Citrus sinensis; type=EST; length=851bp
TGAGAAGCTATATTTTATAAGTCTTGAAATCTCAGGAGAACAGCATTTTA
AGCTACAATATGGTTGAAAGGCACTTGAATCTAAATCTCAAATTGGCCGT
TAAACATGAGAAAGGATGAGCATCATTCGAACTCATCTCCTCTCCATCCA
CAAACCTAATAAGAAAACATTAAAAATCATAATGACCAAAAGAAGGCTAA
ACAAAGGAATCACAATAAATTTATCTGAAAATAAAAGATGCCTCAACCAC
TTATCCCCATTTTCCAGGACATGACAAAATTTTTGCCCACCGGAAAACCG
AGACCCTTGATCCCTACCATCACACTCTTTTGCTCATCCTCCACCGAATT
CAAGTGCTTCTGTTCTGATGCATTGAATTCTATTTTCGAGTTAGCATTTG
TGGGGCTTCCATTAATCTCAAGTGTAGATGCCTTGCCACTTCCACCTAAT
CCCAGCACAGTTACACTATCAATGATCCAACCCTTACTTAAAGCAAACTT
GCCCTCCTGAACTTCTGACCAAATCTTCACAGTTCCGTTACCAGTGGTAG
CAAAAAAATCAACATATGTCGAGTACCCATTCCCAAGTTTCATCTCTGGA
AGCTCATCCTCGTCAAGGTAAAGTTTTCCTTTGGCTTGTACCCCACTTGC
TCCTGCAGGGAAGGTCACTACGAGGCTAAAAGGCGTCATTCTAGCTTCCT
TGGAAATTAGTCCACCTTGCTGCATTGGAAGGATGGTATTCTGGTACAAG
TGCACGTTAACCACATGTAAAGGTGCATCAAGGGTAACAATTTCCCATCT
TTCGATGAAATGGCTTGTGTCATATCAAACACATTGTACCAACTACCTGG
A
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