CX043814 | Citrus Genome Database

Overview


Name	CX043814
Unique Name	CX043814
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	867

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.813e-91
Identity = 159/175 (90.86%), Postives = 161/175 (92.00%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPD+DDDAF+
Sbjct:   35 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.813e-91
Identity = 159/175 (90.86%), Postives = 161/175 (92.00%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPD+DDDAF+
Sbjct:   35 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.534e-90
Identity = 158/175 (90.29%), Postives = 160/175 (91.43%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+QPLPD+DDDAFE
Sbjct:   47 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.534e-90
Identity = 157/175 (89.71%), Postives = 160/175 (91.43%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPD+DD+ F+
Sbjct:   47 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 2.004e-90
Identity = 158/175 (90.29%), Postives = 159/175 (90.86%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              ASQPLPD+DDD FE
Sbjct:   47 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.831e-90
Identity = 156/175 (89.14%), Postives = 159/175 (90.86%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPD+DD+AFE
Sbjct:   47 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 330.102 bits (845), Expect = 9.946e-90
Identity = 156/175 (89.14%), Postives = 159/175 (90.86%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D              A+QPLPD+DDDAFE
Sbjct:   47 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 2.216e-89
Identity = 156/175 (89.14%), Postives = 159/175 (90.86%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV ID              A+QPLPD+DD+AFE
Sbjct:   47 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 4.936e-89
Identity = 155/175 (88.57%), Postives = 158/175 (90.29%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID              A+QPLPD+DDD FE
Sbjct:   47 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

[Close]

BLAST of CX043814 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.436e-88
Identity = 155/175 (88.57%), Postives = 158/175 (90.29%), Query Frame = -1

Query:  343 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 867
            GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+  LPD+DD+AFE
Sbjct:   47 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221

The following BLAST results are available for this feature:

BLAST of CX043814 vs. ExPASy Swiss-Prot

BLAST of CX043814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186


Match Name	E-value	Identity	Description
RAN1B_LOTJA	1.813e-91	90.86	GTP-binding nuclear protein Ran1B (Fragment) OS=Lo...	[more]
RAN1A_LOTJA	1.813e-91	90.86	GTP-binding nuclear protein Ran1A (Fragment) OS=Lo...	[more]
RAN_VICFA	1.534e-90	90.29	GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ...	[more]
RANA1_TOBAC	1.534e-90	89.71	GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta...	[more]
RAN3_ARATH	2.004e-90	90.29	GTP-binding nuclear protein Ran-3 OS=Arabidopsis t...	[more]
RAN2_SOLLC	5.831e-90	89.14	GTP-binding nuclear protein Ran2 OS=Solanum lycope...	[more]
RAN2_ARATH	9.946e-90	89.14	GTP-binding nuclear protein Ran-2 OS=Arabidopsis t...	[more]
RAN1_SOLLC	2.216e-89	89.14	GTP-binding nuclear protein Ran1 OS=Solanum lycope...	[more]
RAN1_ARATH	4.936e-89	88.57	GTP-binding nuclear protein Ran-1 OS=Arabidopsis t...	[more]
RANB1_TOBAC	1.436e-88	88.57	GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_13F01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F01-L1-1-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX043814 ID=CX043814; Name=CX043814; organism=Citrus sinensis; type=EST; length=867bp
ACCGCGGCCCCCCCTTTTTTTTAAACTCAACTCAAGCCAGGTAAGCAGTA
AATTGAATCCTCAATTATCAACACAATATATAAATGAACTAGGATATGGG
GCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAA
CAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGAATTA
GGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAATCCA
AAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATATTGA
ACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCGAAGG
CGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCA
GCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGC
AAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTC
TGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAG
ATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGC
TTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACAATTG
GGATGTTTTCACACACCCTGCAGAGATCACGGTGCCACGTCGGAACATTC
TTATACGTCAAGCGGGCAGTAACATCAAACATGATGATAGCACATTGCCC
ATGGATGTAGTATCCATCTCTAAGACCACCAAACTTCTCTTGTCCGGCAG
TGTCCCAGCAATAGAATCGTATTTTTCCACAGTTGGTAAAGAAGTCCAAT
GGATGAACTTCCACACC