CX043799

Overview
NameCX043799
Unique NameCX043799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043799_ssr229 microsatellite CX043799_ssr229:229..243. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 8.419e-49
Identity = 110/182 (60.44%), Postives = 130/182 (71.43%), Query Frame = -3
Query:  273 NNY-LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERD----NLRIENFVVLEDLGADY 803
            NNY LPFNENDSEEM LYGLI ++T +   ++   S+ +  + VSS   E     KSYRGVRRRPWGKFAAEIRDSTR+GIRVWLGTF+S           AFSMRGSSAILNF  ERVQESL ++K   E+GCSPVVALKRKHSMRR+M   NKK K+ D    +++++N VV EDLG  Y
Sbjct:   32 NNYSLPFNENDSEEMFLYGLIEQSTQQTYIDS--DSQDLPIKSVSSRKSE-----KSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRM--TNKKTKDSDFDHRSVKLDNVVVFEDLGEQY 204          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.651e-28
Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  360 LIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVVALKRKHSMRRK 749
            L++  T     +       I +EE    T     +EKSYRGVR+RPWGKFAAEIRDSTR GIRVWLGTFD+           AF+++GS A+LNFP + V+ESL+ M+  N  +G SPV+ALKRKHSMR +
Sbjct:   44 LLSSPTDNYCDDFFAFESSIIKEEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNR 174          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.816e-28
Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = -3
Query:  360 SEALVSSKRIKEEEVSSTTEENPT---KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVVALKRKHSMRRK 719
            S  ++  + I+  +VS++ EE      +E+SYRGVR+RPWGKFAAEIRDSTR+GIRVWLGTFD            AF+ +GS A LNFPVE V+ESLK M+  N  +G SPV+ALKRKHS+R +
Sbjct:   55 SPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNR 178          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.334e-21
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = -3
Query:  459 LPFNENDSEEMLLYGLIAEATPEATSEALVS------SKRIKEEEVSSTTEENP----------TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPV 794
            LP  ENDSE+ML+YGL+ +A    TS + +S      + +++  E  +  EE P           K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++           AF MRGS A+LNFP+
Sbjct:   48 LPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPL 175          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 55/119 (46.22%), Postives = 70/119 (58.82%), Query Frame = -3
Query:  438 LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQESL 794
            LP NENDS+EM+LY ++ EA           ++ +    +    +      K YRGVRRRPWGK+AAEIRDS RHG RVWLGTF++           AF MRG+ A+LNFP E V  S+
Sbjct:    9 LPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLPRNNILRPLQ---CIGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVNASV 124          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 60/138 (43.48%), Postives = 76/138 (55.07%), Query Frame = -3
Query:  459 LPFNENDSEEMLLYGLIAEA-------------------------TPEATSEALVSSKRIKEEEVSSTTEE-NPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPV 794
            LP  ENDSE+ML+YG++ +A                         TPE  S A V S  +K+E+ S  +      K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++           AF MRGS A+LNFP+
Sbjct:   71 LPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPE--SFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.814e-20
Identity = 57/125 (45.60%), Postives = 73/125 (58.40%), Query Frame = -3
Query:  462 LPFNENDSEEMLLYGLIAEA-----TPE-ATSEALVSSKRIKEEEVSSTTEENPT--------KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFP 794
            LP   NDSE+M++YG + +A     TP   TSE +    R + E   ST+   PT        K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT++S           AF MRG+ A+LNFP
Sbjct:   40 LPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFP 164          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 64/165 (38.79%), Postives = 87/165 (52.73%), Query Frame = -3
Query:  342 LPFNENDSEEMLLYGLIAEA-----TPEATSEALVSSKRIKEEEVSSTTEEN--PTKE----KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHS---MRRKMVTNNK 794
            LP   +DSE+M++Y L+ +A     +P   S   V S++ +EE V S  E    P  E    + YRGVRRRPWGKFAAEIRD  ++G RVWLGT+++           A+ MRGS A LNFP        + ++   +   SP  A   ++S    RRK V   K
Sbjct:   41 LPLKVDDSEDMVIYTLLKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVRVTAKRRASPEPASSSENSSPKRRRKAVATEK 205          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 52/129 (40.31%), Postives = 73/129 (56.59%), Query Frame = -3
Query:  462 LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIK---EEEVSSTTEENPT---------------KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFP 794
            LP   +DSE+M++YGL+++A     +   ++S  IK    EE+   T   P+               K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT+++           A+ MRGS A+LNFP
Sbjct:   32 LPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160          
BLAST of CX043799 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  456 IKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXAFSMRGSSAILNFPVE 692
            +K++EV    E  PT++K YRGVR+RPWGKFAAEIRD  R G RVWLGTFD+           AF +RGS AI+NFP+E
Sbjct:  126 MKQQEVVQKVEVVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
The following BLAST results are available for this feature:
BLAST of CX043799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ERF92_ARATH8.419e-4960.44Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF94_ARATH1.651e-2851.15Ethylene-responsive transcription factor ERF094 OS... [more]
ERF93_ARATH2.816e-2854.84Ethylene-responsive transcription factor 15 OS=Ara... [more]
EF101_ARATH3.334e-2145.31Ethylene-responsive transcription factor 2 OS=Arab... [more]
PTI5_SOLLC1.267e-2046.22Pathogenesis-related genes transcriptional activat... [more]
EF100_ARATH2.822e-2043.48Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF1_SOLLC4.814e-2045.60Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF1_TOBAC5.323e-1938.79Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_NICSY9.079e-1940.31Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF5_TOBAC1.549e-1856.96Ethylene-responsive transcription factor 5 OS=Nico... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_13E02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13E02-J3-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043799 ID=CX043799; Name=CX043799; organism=Citrus sinensis; type=EST; length=865bp
CTTTAACTTCATATTAAATAAAAGAAACTAGATACACGAATCACCCCGAA
TTGCTTTCAAAAAATGGAAGCTTGTACAGGCATAAACCGTCTTTGGTTTA
CATATTGAAAAAGAAGATAACGACAATAACTAAATAAAAAAAGATAAAGG
GCAAGAAGATTAAGATAAGGCCAGAAAGTTACAAGTAGTTGACTTATTAT
CTAATTCACCAATTAGCGAGGTCTTGCTGTAGTAGTAGTAGTACTTTCAG
ATGAACTTAGCAGCTCTTCCAAGTAATCTGCTCCTAAATCTTCCAACACC
ACAAAATTTTCAATCCTCAAATTATCTCTCTCTTTATGCTTCTTATTATT
AGTCACCATTTTTCTTCTCATAGAATGTTTCCTCTTGAGTGCAACCACAG
GTGAGCATCCCTCCTCGGTGTTACACTTCATGTCTTTAAGTGATTCTTGA
ACCCTTTCAACAGGAAAATTGAGTATTGCTGAAGAGCCCCTCATTGAGAA
AGCAGCTTGATCGTAAGCCAAAGCAGCTGCTTCAGCACTATCGAATGTCC
CTAGCCAAACCCTAATCCCATGCCTAGTTGAATCCCTTATTTCTGCTGCA
AATTTCCCCCACGGCCGCCGTCGAACGCCTCTATATGACTTTTCCTTGGT
GGGGTTTTCCTCTGTTGTTGAACTCACCTCTTCTTCTTTAATTCTCTTGG
AGCTTACTAGTGCTTCTGATGTTGCTTCCGGTGTGGCTTCTGCTATTAGT
CCATAGAGAAGCATTTCTTCTGAGTCATTTTCATTGAATGGAAGATAATT
GTTATAAAAAGGGAAAGACTCCGGTGACCCGAAAGAGGATTCCGATGAGG
AAATTGAATTTGGAG
back to top