CX043795

Overview
NameCX043795
Unique NameCX043795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:726..1520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.656e-22
Identity = 59/93 (63.44%), Postives = 62/93 (66.67%), Query Frame = -1
Query:  517 VAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 795
            VAPA+LIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI              PQGLMV
Sbjct:  454 VAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.836e-21
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            APASLIA+NA           K SEW  GYNAMTDKYEN++++GVIDPAKVTRCALQNAASV+GMVLTTQAI
Sbjct:  451 APASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAI 522          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.458e-20
Identity = 54/93 (58.06%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  517 VAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 795
            ++PA+LIA NA             S+W  GYNAMTD YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI              P+GLMV
Sbjct:  494 LSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.904e-20
Identity = 55/93 (59.14%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  517 VAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 795
            VAPA+LIA NA           K  EW  GYNAMTD YEN++++GVIDPAKVTRCALQNAASVAGMVLTTQAI              PQGL +
Sbjct:  495 VAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.241e-20
Identity = 55/89 (61.80%), Postives = 58/89 (65.17%), Query Frame = -1
Query:  517 SLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 783
            SLIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI              P+GLMV
Sbjct:  495 SLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 583          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.006e-15
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = -1
Query:  619 VAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQN 795
            VAPASLIA NA           KA EW  GYNAMTDKYEN+++AGVIDPAKVTRCALQN
Sbjct:  437 VAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQN 495          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP + IA NA           + ++++ GYNAMTD YE+M+ AGV+DPAKV R  LQNA S+AGMVLTT+A+
Sbjct:  448 APLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEAL 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.944e-13
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           ++ E   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  447 APVRQIAENAGKDGAVVLNKLESQENEIGYNAATDKWENMVEAGIIDPTKVTRTALQNAASIAALLLTTEAV 518          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.558e-13
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           K S++ TGYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VLTT+AI
Sbjct:  448 APLRQIADNAGVEGSVIVSRVKDSDFNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519          
BLAST of CX043795 vs. ExPASy Swiss-Prot
Match: CH60_LACHE (60 kDa chaperonin OS=Lactobacillus helveticus GN=groL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.119e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  577 APASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 792
            AP   IA NA           +  E   GYNA TDK+ENM+ AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  447 APVRQIAENAGKDGSVILDKLEHQENEIGYNAATDKWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAV 518          
The following BLAST results are available for this feature:
BLAST of CX043795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RUB1_BRANA2.656e-2263.44RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT3.836e-2172.22RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH1.458e-2058.06RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_PEA1.904e-2059.14RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA4.241e-2061.80RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO7.006e-1569.49RuBisCO large subunit-binding protein subunit alph... [more]
CH601_ACAM12.254e-1352.7860 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH60_LACAC2.944e-1352.7860 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH602_ANAVT6.558e-1354.1760 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH60_LACHE1.119e-1252.7860 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043795 ID=CX043795; Name=CX043795; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTTTTTTTAACGATGAAAGATGGAGAAGACTCATTGATCCA
TGTTGGATCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTA
GTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTA
TTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGC
CATCAGATTAAGGCCATAAGGCCGTTGGTTGGTTTTTTTTCTTAATGTTT
ATGTCATTATTTGTCGGACCGTTCAATAATTAATAGCTACTTACCAGAAT
TGGGATCAAGTACCCATAAGCAAAAATAAATTTTCACCGCTGCATCTCAA
GACGGTGAAGAGCAGACAACATTTTACAGCAATAATCCAATAATCCCGTA
CAAAAAAGACACGATTTTATATCAATTAAGTAAAACTTGTCTTTTCAGTT
CACCGCAATAAAACCACTCTTTCATCTATAAACCTCCTAACTAAATCTGG
AGAGTCCTAGAGATTACACCATAAGACCTTGTGGCGGAGCGGCTACCGGA
GTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGAGTGGTCAGGACCAT
TCCTGCAACTGAAGCCGCATTCTGCAATGCACATCTTGTCACCTTTGCAG
GATCAATAACTCCAGCCTGAAGCATGTTCTCATACTTGTCTGTCATTGCA
TTGTAACCAGTCGTCCATTCACTAGCTTTCACCTTCTCCACAACAACCTC
ACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGCAGGTGCTAC
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