CX043679

Overview
NameCX043679
Unique NameCX043679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3594 contig Csv1_Contig3594:144..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.656e-65
Identity = 122/250 (48.80%), Postives = 172/250 (68.80%), Query Frame = -1
Query:   73 HKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF--TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 816
            HKFT++  S+TG+ ++A+GLKK E+F+ D+++  K+ N T DVKVDT SNV T +T+ +  P  K   SF +PD KSGK++LQYLH +A I++SIGL  +PL+  S   G+  + LG ++ FDTA+ +F K  AG+  +  D  A+L L DKG  + ASY H V P   T+V AE+TH FS+ +N+ TIG+ HL+DPLT VK R++  GK +   Q EWRPKSL T+S E D++AI  + K+GLA+ALKP
Sbjct:   27 HKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 6.541e-64
Identity = 115/249 (46.18%), Postives = 170/249 (68.27%), Query Frame = -1
Query:   73 KFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF--TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 813
            KFT+S  S TG+ ++++G KK E+F+GD+N+  K+ N T D+KVDT SN+ T +T+ +  P  KA LSF++P+  SGK++LQYLH +A I SS+GL   P++  S+ IG+  L  G ++ FDT      K  A +   K D   +L L +KG  L ASY HA++P   T+V  +++HRFST +N+FT+G+ H +DPLT VK R+++ GK +   Q EWRPKSL+T+S+E D+KAI  + K+GL++ALKP
Sbjct:   28 KFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 2.748e-62
Identity = 117/249 (46.99%), Postives = 171/249 (68.67%), Query Frame = -1
Query:   73 HKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVD-PFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 816
            HKFTL+  +S G+ ++AT  KK ++  G+I S  K+ N TVDVK ++ SNV T VT+ ++ P  K+ LSF +PD +SGK +LQY H +A + +SIGL  +P++ LS+  G+K L +G +V  DTA+ +  KY AG+  +  D  A+L L +KG +L ASY H V+   T+V AE+TH FS+ +NS T G+ H +DPLT+VK R ++ GK +   Q EWRPKS+ T+SAE D+KAI+ + K+G+A+ALKP
Sbjct:   26 HKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.044e-61
Identity = 115/250 (46.00%), Postives = 165/250 (66.00%), Query Frame = -1
Query:   73 HKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTS--VAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 816
            HKF+++  S TG+ ++++G KK ++F+ D+N+  K+ N T D+KVDT SN+ T +T+ +  P  K  LSFR+PD +SGKL++QYLH +A I +S+GL   P++  S  +G+  + LG +V FDT +  F K  AG+     D  A+L L +KG  L ASY H V P TS  V AE+ H FST +N  T+G+ H +DPLT VK R+++ GK +   Q EWRPKSL TVS E D+K+++   K GLA+ALKP
Sbjct:   27 HKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.730e-60
Identity = 119/250 (47.60%), Postives = 167/250 (66.80%), Query Frame = -1
Query:   73 HKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDIL-PSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF-TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 816
            HKFTL+  ++ G  ++AT  KK ++ +G+I S  K+ N TVDVK ++ SNV T +T  D+  P  K  LSF +PD KSGK++LQYLH +A I++SIGL   P++ LS   G+  L +G +V  DTA+ +F KY A +     D  A+L L +KG +L ASY H V+   T+V AE+TH FS+ +NS T G+ H +DPLTLVK R+++ GK +   Q E+ PKSL T+SAE D+KAI  + K+G+AIALKP
Sbjct:   26 HKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 1.081e-58
Identity = 108/247 (43.72%), Postives = 160/247 (64.78%), Query Frame = -1
Query:   73 KFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 813
            KF+++  SSTG+ ++ TG  K  +F+GD+ +  K+ N T DVKV T S++ T +T  +  P  K  +  ++PDHKSGK ++QY H +A I +S+G   TP++  S  +G+  L LG +V ++T S +F  + AG    K D +A+L+L DKG+ L ASY   V P T V AE++H F+T +N+ T+G+ H +DPLT VK R+++ G      Q EWRPKS  TVS E DSKAI+ + K+G+A+ALKP
Sbjct:   28 KFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 1.785e-53
Identity = 103/249 (41.37%), Postives = 156/249 (62.65%), Query Frame = -1
Query:   73 KFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF--TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 813
            KF+++  S  G+ +++TG KK ++ +GD+    +  N T D+KV T S      T+ +  P  ++  SF++PD  SGK++LQYLH +A I +S+GL   P +  S  IGS  L +G +V FDT S +F K  AG+   K D  A+L + DKG  L ASY H V+P   T+V AE++H+ S+  ++ T+G+ H +DPLT VK R++  G  +   Q EW+PKS  T+S E D+K+I+ + K+GLA+ALKP
Sbjct:   28 KFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.350e-51
Identity = 101/249 (40.56%), Postives = 157/249 (63.05%), Query Frame = -1
Query:   76 KFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDI-LPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF--TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALK 813
            KF L+  S  G+ ++A G +K+E   G++++  K+   TVDVK ++ S++ T +T+ +   P  K+ ++  +PD +SGKL+ QYLH +A +++S+GLN  P++ LS   GSK L +G +V FDTA++ F KY A + L  PD  A+L L + G  L ASY H V     T+V AE++H  S  +++   GS H +DP T +KTR ++ G  +   Q EWRPKS VT+S + D+KAI  + K+GL++ LK
Sbjct:   28 KFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276          
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC_NEUCR (Mitochondrial outer membrane protein porin OS=Neurospora crassa GN=B7H23.070 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 58/244 (23.77%), Postives = 105/244 (43.03%), Query Frame = -1
Query:  106 TLSVPSST--GLGLSATGLKK-DEIFIGDINSVY--KSGNTTVDVKVDTYSNVSTKVTMVDILPS---TKAALSFRIPDHKSG-KLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQN-SFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSA 807
            T+ V S+T   +    TG    D++  G +   +  K    TV    +T + + TKV M D L      +   SF    +  G K +L +   +    +   L   P   + A +G +  + G   G+D   A+   Y+A +G + P +SAA+   D      ASY H V+      ++ T    T       + + + +DP++ VK +++D G  A+ +    R    + V A +D++ ++ A
Sbjct:   28 TIEVKSNTPNNVAFKVTGKSTHDKVTSGALEGKFTDKPNGLTVTQTWNTANALETKVEMADNLAKGLKAEGIFSFLPATNARGAKFNLHFKQSNFHGRAFFDLLKGPTANIDAIVGHEGFLAGASAGYDVQKAAITGYSAAVGYHAPTYSAAITATDNLSVFSASYYHKVNSQVEAGSKATWNSKTGNTVGLEVATKYRIDPVSFVKGKINDRGVAAIAYNVLLREGVTLGVGASFDTQKLDQA 271          
BLAST of CX043679 vs. ExPASy Swiss-Prot
Match: VDAC_DROME (Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 58/256 (22.66%), Postives = 111/256 (43.36%), Query Frame = -1
Query:   76 KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVYKSGN--TTVDVKVDTYSNVSTKVTMVD-ILPSTKAALSFRIPD---HKSGKLDLQYLHPHAAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINS-APKMGLAIALK 813
            K  L   +S+G+  +  G    E     G + + YK  +   T+  K +T + + T+V + D +L   K +L         +K+GK  + Y H +   DS + ++   PL+  SA +G +  + G +  FDT  +        +G    DF     + D GQ    S          V  +++    T    F IG+ + +D    V+ ++++  +  + +Q++ R    +T+S   D K  N+   K+G+ + L+
Sbjct:   27 KLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVND-GQEFSGSIFQRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLRDGVTLTLSTLVDGKNFNAGGHKIGVGLELE 281          
The following BLAST results are available for this feature:
BLAST of CX043679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VDAC2_SOLTU2.656e-6548.80Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC_PEA6.541e-6446.18Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ORYSJ2.748e-6246.99Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_SOLTU1.044e-6146.00Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC1_WHEAT5.730e-6047.60Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC2_ARATH1.081e-5843.72Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ARATH1.785e-5341.37Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC_MAIZE6.350e-5140.56Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC_NEUCR4.449e-1223.77Mitochondrial outer membrane protein porin OS=Neur... [more]
VDAC_DROME8.390e-1122.66Voltage-dependent anion-selective channel OS=Droso... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12G04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G04-M8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043679 ID=CX043679; Name=CX043679; organism=Citrus sinensis; type=EST; length=816bp
TTTTTTTTTTTTTTTTTAAATTTTTTTTCTTTAAAAAAAGTAGCAGAACA
GGGCAAAGTTGACCCCATTTCAAGGCTTGAGAGCGATGGCAAGACCCATT
TTGGGAGCAGAATTAATGGCCTTTGAGTCGTACTCAGCTGAAACAGTTAC
CAGTGACTTAGGTCGCCATTCACGCTGAAATTGCACTGCAAACTTCCCAC
CATCTGAGAGTCGTGTTTTTACCAATGTCAATGGATCTACGAGATGTGAG
CTTCCAATGGTGAAACTGTTTTGATACGTAGAAAATCTATGAGTCATTTC
AGCGGCAACTGAAGTGAATGGATCCACAGCATGAATGTATGATGCCTTGA
GTGCCTGTCCCTTATCCGCCAGTAAGAGGGCAGCAGAGAAATCTGGCTTG
TTCAAGCCAATCCCAGCAGTGTACTTAATGAATGAAGCAGAAGCTGTATC
AAATCCAACTTCACCACCTAAAACAAGCTCTTTACTTCCAATTGTTGCTG
ATAGCTCCAAAAGTGGGGTTGGATTAAGGCCAATACTGGAATCAATGGCA
GCATGGGGATGAAGGTACTGGAGATCCAACTTGCCAGACTTGTGATCTGG
TATTCTGAAGCTCAGAGCTGCTTTGGTAGATGGCAAGATATCAACCATAG
TTACTTTTGTAGATACATTAGAATAAGTATCAACTTTCACATCCACAGTA
GTATTTCCACTCTTGTACACACTATTTATGTCACCAATAAAAATTTCATC
CTTCTTCAGACCTGTTGCTGAAAGTCCCAGGCCAGTGGAGCTTGGCACCG
ACAGAGTAAACTTGTG
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