CX043654

Overview
NameCX043654
Unique NameCX043654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.277e-52
Identity = 105/139 (75.54%), Postives = 115/139 (82.73%), Query Frame = -2
Query:  238 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQEF 654
            MSS  +TKGGRGKPK++KS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNK NRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP+K+GKG+ +IG ASQEF
Sbjct:    1 MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.626e-51
Identity = 105/140 (75.00%), Postives = 114/140 (81.43%), Query Frame = -2
Query:  238 SMSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQEF 657
            S + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIG ASQEF
Sbjct:    3 SGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.731e-51
Identity = 103/138 (74.64%), Postives = 113/138 (81.88%), Query Frame = -2
Query:  238 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQEF 651
            + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLK+GKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIG ASQEF
Sbjct:    5 AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.005e-50
Identity = 106/139 (76.26%), Postives = 113/139 (81.29%), Query Frame = -2
Query:  238 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQEF 654
            MSS+G+ KGGRGK KSTKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP+K GK + +IG ASQEF
Sbjct:    1 MSSSGA-KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.425e-47
Identity = 102/139 (73.38%), Postives = 109/139 (78.42%), Query Frame = -2
Query:  238 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQEF 654
            MSSAG   GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIG ASQEF
Sbjct:    1 MSSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.425e-47
Identity = 102/139 (73.38%), Postives = 109/139 (78.42%), Query Frame = -2
Query:  238 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQEF 654
            MSSAG   GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIG ASQEF
Sbjct:    1 MSSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.067e-45
Identity = 98/137 (71.53%), Postives = 107/137 (78.10%), Query Frame = -2
Query:  238 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQEF 648
            S+    GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIG ASQEF
Sbjct:    2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.067e-45
Identity = 98/137 (71.53%), Postives = 107/137 (78.10%), Query Frame = -2
Query:  238 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQEF 648
            S+    GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIG ASQEF
Sbjct:    2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 90/133 (67.67%), Postives = 96/133 (72.18%), Query Frame = -2
Query:  262 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG--KGRED 654
            M+  G T G  G  K+T   SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP+K G  K +ED
Sbjct:    1 MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKPQED 130          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.593e-38
Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = -2
Query:  265 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKM--GKGRE 627
            G+GK    K++SRS KAGLQFPVGRIAR+LK GKYA+R+GAGAP                 AGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLP+K   GKG E
Sbjct:    5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGEE 127          
The following BLAST results are available for this feature:
BLAST of CX043654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AX_CICAR3.277e-5275.54Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH1.626e-5175.00Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH4.731e-5174.64Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AX_PICAB4.005e-5076.26Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ORYSJ1.425e-4773.38Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI1.425e-4773.38Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ5.067e-4571.53Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI5.067e-4571.53Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A6_ARATH1.209e-3867.67Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A_CHLRE4.593e-3867.48Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12F01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F01-K2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043654 ID=CX043654; Name=CX043654; organism=Citrus sinensis; type=EST; length=688bp
CTTTTTTTTTTTTTTTTAATGCAAACCAACTTCATTGTTGCTAACTTTAA
ACCCCCACACAATGAGATGGGACATCAAAAAATTATTGTTTCACTATATT
CGGCCGGAACCCAAATCCCAGTTTACACGGAGATAAAAGGATCACAAATA
AAGAAAAAAATTGCGTAAATCAATCAATCCTGCATTTTTTTTTTTTTTAA
GTATTCAAATTCAACAAGCAAAGAAGTTTCAGCACTAAAATTCTTGCGAA
GCAAATCCAATATCCTCCCTTCCTTTGCCCATTTTCCTTGGCAACAGGTT
CTGATGAATGTTTGGCAAAACTCCTCCATTTGCAATAGTAACTGTGCCCA
AAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGTTGAATGTGCCTT
GGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATTGCCAGCAAGCTC
CAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATAGGTAGACGGGGG
CGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTGAGGAAGCGAGCA
ATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGATCTGGAAATTGA
TTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTGATCCTGCGGAGC
TCATCGATTGACAAAATAATGCAAATGCTCTCTTGCCT
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