CX043642

Overview
NameCX043642
Unique NameCX043642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX043642 vs. ExPASy Swiss-Prot
Match: NDUB7_DICDI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Dictyostelium discoideum GN=ndufb7 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 2 
Query:  134 SKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENDRHSYEKCEYELVMERMLQMQKIREEEAKLKQSQTQKGAP 394
            S+KMIATQ++  +  +P+ +RD CAHLLIPLN CR + +Y PWKC +++H+YE C+Y+  + R ++  +  E E   ++   +K  P
Sbjct:   15 SRKMIATQQQCEDKNLPLSFRDYCAHLLIPLNDCRVSTYYAPWKCMDEKHAYEGCQYDEYLYRKIKKSEQDEAERIKREVVIEKENP 101
The following BLAST results are available for this feature:
BLAST of CX043642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NDUB7_DICDI1.285e-1641.38NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12E04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12E04-I8-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043642 ID=CX043642; Name=CX043642; organism=Citrus sinensis; type=EST; length=595bp
GCCAGTCAGAACACCACAAACATAGCATTTAGAGCTGCGAGCTAGAGTTA
GTATTGAAGAGAGCAACAAAAGAAACACATACAAACAAATAGTAATAAAA
AAAGTCCATAAAATCATGGAAGTGCCGGGATCATCGAAGAAGATGATCGC
AACCCAAGAGGAGATGGTGGAGGCAAGAGTCCCGATTCCTTACAGAGACC
AGTGCGCGCATTTGCTGATCCCACTGAACAAGTGCAGGCAGGCGGAGTTT
TACTTGCCCTGGAAGTGCGAGAACGATCGCCATTCCTATGAGAAGTGCGA
GTACGAACTCGTTATGGAACGTATGTTGCAGATGCAGAAGATCCGTGAAG
AGGAGGCCAAATTGAAGCAGTCCCAGACCCAGAAGGGCGCCCCCATCCCT
CTTATTCCTAAGACCGCCAATGCTTAGAGGCTCTAAACCCAATGTGGATG
CGTCAATGTTTCTTGCTGCCGTCTAATAAGTGTTATTTGGAACTGTTTGT
TTGGGACTATTTAACCTTTTTATTGGTTCTGTGACCTTTTATATTGAATA
AAAATTATTCAAATATGATGACATAATTTAAAAAAAAAAAAAAAA
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