DC900304

Overview
NameDC900304
Unique NameDC900304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900304_ssr592 microsatellite DC900304_ssr592:592..603. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:139..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900304 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.189e-17
Identity = 48/94 (51.06%), Postives = 57/94 (60.64%), Query Frame = -3
Query:  293 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 574
            MARSF+N K+ SALVADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of DC900304 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.814e-13
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = -3
Query:  287 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 574
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of DC900304 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = -3
Query:  287 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 574
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
BLAST of DC900304 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = -3
Query:  287 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 574
            MARS S+ K   A V D +  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D ADLR M L H
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNH 100          
The following BLAST results are available for this feature:
BLAST of DC900304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARG2_PHAAU1.189e-1751.06Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI8.814e-1345.83Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI7.462e-1240.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI4.837e-1140.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionDC900304 VSS Citrus sinensis cDNA clone VS28653 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900304 ID=DC900304|Name=DC900304|organism=Citrus sinensis|type=EST|length=603bp
GTAAATAATAAATCATCTTTATTTCCGAAAAATGGCAACAAAAAAACAGG
AATGTTACATGCAATACAAAATCTAGTTTGGATCCCCAAGTCAAAACAGA
GAGAACAGGGGAGCTGCAGCTGCTACGCCAATTTCCCGGAATTCCTCGAG
AGCTCATGCGGCTGACCACATCAGAACAAATCCCTTTTTAACCTTTTTTT
AATTTTTCTTTCGTCCTTCCTCAGTTTCCATGTCCGAATTAATATATATT
AATAATAATACTTATTAATTTTGATGATCAGTTGTTGTGCTTCAAGAACA
TGGCTCTGAGGTCGGCCCCATCGAGCTCGTTGGCGAGATTCTCCGGCCTG
TAGACACCAGTGACTGGGTCTGGGACCCACGAGACCTTCTCACTGGATCC
TGTCATCTCTTCTGCTGGTTTCTTCAACATCGCAGCAGCACTCCTAGCTC
CCCCTGTTGCCCGCGACACAGCGCCTTGTGATGCCGCCGAGTATCCTCTT
TTGTAGATGGCGTTAGAGATTCCGTCAGCGACGAGAGCAGAGAAAAGCTT
AGCGTTTGAGAAAGAGCGAGCCATTTTTCTTAGTTATGTGGGATGATGAT
GAT
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