CX043630

Overview
NameCX043630
Unique NameCX043630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3448 contig Csv1_Contig3448:1297..2054. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.676e-69
Identity = 124/154 (80.52%), Postives = 143/154 (92.86%), Query Frame = -1
Query:  297 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYRAPPV 758
            R+LL+PL D +D+++L +YLESFYTLRKPVASTINTLAGALYKVF +SPD+AR+EMR ACFDYLSLGG+ S GP+ALLSGLNPRP+SL LHFFAVAIYGVGRLL+PFPSPKRMW+GARLI GASGIIFPIIK+EG+RQMFFPA +PA YRAPP+
Sbjct:  385 RDLLRPLRDLHDSSTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDKARQEMRNACFDYLSLGGICSQGPIALLSGLNPRPISLFLHFFAVAIYGVGRLLIPFPSPKRMWLGARLILGASGIIFPIIKSEGLRQMFFPAIVPAYYRAPPI 538          
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.638e-34
Identity = 68/147 (46.26%), Postives = 99/147 (67.35%), Query Frame = -1
Query:  318 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPA 758
            R LL+PL +  +A  + + ++SFY +RKP+++T+NTL  A  +V  +S D+A++ MRQ C+DYLS GG  ++G +ALL G+NPRP+SL+ H  A+ +  +G LL PFPSP R+W   RL   A  ++ P +KAEGV QM FP    A
Sbjct:  359 RRLLQPLSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFGLAMKMLVPHLKAEGVSQMLFPVNAAA 505          
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.132e-34
Identity = 69/151 (45.70%), Postives = 99/151 (65.56%), Query Frame = -1
Query:  306 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYRA 758
            R LL+PL +  DA  +   + SFY +RKP+++T+NTL  A  +V   S D+A++ MRQ  +DYL  GG  ++G +ALL G+NPRPLSLV H  A+ +  +G+LL PFPSP R+W   +L   A  ++ P +KAEGV QM FPA   A +++
Sbjct:  360 RRLLQPLSNLGDANKVSEVINSFYDIRKPMSATVNTLGNAFSQVLIGSTDEAKEAMRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSIGQLLSPFPSPLRIWHSLKLFGLAMKMLVPNLKAEGVSQMLFPANAAAYHKS 510          
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.812e-33
Identity = 68/148 (45.95%), Postives = 101/148 (68.24%), Query Frame = -1
Query:  309 LLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYR 752
            LLKPL +  D   +   ++SFY LRKP+++T+NTL  + ++V  +S D+A++ MRQ CFDYLS GG  ++G +AL+ G+NPRPLSL  H F +++  +G+LL PFP+P R+W   RL+  +  ++ P +KAEG+ QM  P T  A YR
Sbjct:  363 LLKPLGNLGDENKVSEVMKSFYALRKPMSATVNTLGNSFWQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSIGQLLSPFPTPLRVWHSLRLLDLSLKMLVPHLKAEGIGQMLSP-TNAAAYR 509          
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.875e-30
Identity = 68/150 (45.33%), Postives = 94/150 (62.67%), Query Frame = -1
Query:  309 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYR 758
            R LL+PL + +DA  +   ++SFY +RKP+++T+NTL  A  +V  +S D+A++ MRQ CFDYLS GG  ++G +ALL G+NPRPLSL+ H   + +  +G+LL PFPSP  +W   RL             AEGV QM  PA   A YR
Sbjct:  360 RRLLQPLRNLSDANKVSEVIKSFYVIRKPMSATVNTLGNAFSQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGMMALLGGMNPRPLSLIFHLCGITLSSIGQLLSPFPSPLGIWHSLRLFG-----------AEGVSQMLSPA-YAAAYR 497          
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.876e-29
Identity = 62/150 (41.33%), Postives = 97/150 (64.67%), Query Frame = -1
Query:  309 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYR 758
            RNLLKPL + ++   +   ++SFY +RKP+++T+NTLA    +V  ++ D+AR+ MRQ CF+YL+ G   + G + +L G+NP PL+LVLH  A+ +  +G LL PFPSP+R W   R+++ A  ++   +  EG ++M  P T  A YR
Sbjct:  359 RNLLKPLPNLSNTKKVSDLVKSFYIIRKPMSATVNTLASIFSQVLVATTDEAREGMRQGCFNYLARGDFKTRGLMTILGGMNPHPLTLVLHLVAITLTSMGHLLSPFPSPRRFWHSLRILAWALQMLGAHLVDEGFKEMLIP-TNAAAYR 507          
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.646e-18
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = -1
Query:  357 RNLLKPLHDFNDAASLGRYLESFYTLRKPVAS-TINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFP---SPKRMWIGARLISGASGIIFPIIKAE 758
            R LLK + D  D A++ +  +SF+  RK   S  +N LA ALY++FS++ D  R ++R+ACF Y  LGG   TGPV LLS L+P PL L+ HFF+VA+Y         P    P+ ++    ++  A  IIFP+I +E
Sbjct:  431 RQLLKDIPDLYDDAAIFQAKKSFFWSRKRSHSFVVNVLAQALYELFSATDDSLR-QLRKACFLYFKLGGECLTGPVGLLSILSPDPLLLIRHFFSVAVYATYFCFKSEPWATKPRALFSSGAILYKACSIIFPLIYSE 567          
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.646e-18
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = -1
Query:  357 RNLLKPLHDFNDAASLGRYLESFYTLRKPVAS-TINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFP---SPKRMWIGARLISGASGIIFPIIKAE 758
            R LLK + D  D A++    +SFY  RK   S  +N LA ALY++FS++ D    ++R+ACF Y  LGG    GPV LLS L+P PL+L+ HFFAVAIY V       P    P+ +   + ++  A  +IFP+I +E
Sbjct:  432 RKLLKGIPDLYDDAAIFEANKSFYWARKTSHSFVVNILAQALYELFSATDDSLH-QLRKACFLYFKLGGECVAGPVGLLSVLSPNPLALIGHFFAVAIYAVYFCFKSEPWITKPRALLSSSAVLYKACSVIFPLIYSE 568          
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18
Identity = 56/138 (40.58%), Postives = 81/138 (58.70%), Query Frame = -1
Query:  357 RNLLKPLHDFNDAASLGRYLESFYTLRKPVAS-TINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFP---SPKRMWIGARLISGASGIIFPIIKAE 758
            R LLK + D  D A++ +  +SF+  RK   S  +N LA ALY++FS++ D    ++R+ACF Y  LGG   TGPV LLS L+P PL L+ HFF+VAIY         P    P+ ++    ++  A  I+FP+I +E
Sbjct:  430 RQLLKDIPDLYDDAAIFQAKKSFFWSRKRTHSFVVNVLAQALYELFSATDDSLH-QLRKACFLYFKLGGECVTGPVGLLSILSPHPLVLIRHFFSVAIYATYFCFKSEPWATKPRALFSSGAVLYKACSILFPLIYSE 566          
BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG1_CANAL (Squalene monooxygenase OS=Candida albicans GN=ERG1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  435 KPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGV-----GRLLLPFP 746
            K + DF+D   + + L++F+  RK + + INTL+ +LY +F++     R  +R  CF Y   GG    GP+ LLSG+ P P+ L  HFF+VA Y V      R LL FP
Sbjct:  362 KFVEDFDDHQLIAKRLKTFHRKRKNLDAVINTLSISLYSLFAADKKPLRI-LRNGCFKYFQRGGECVNGPIGLLSGMLPFPMLLFNHFFSVAFYSVYLNFIERGLLGFP 469          
The following BLAST results are available for this feature:
BLAST of CX043630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ERG1_PANGI2.676e-6980.52Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH1.638e-3446.26Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG12_ARATH8.132e-3445.70Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG12_BRANA1.812e-3345.95Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG11_BRANA1.875e-3045.33Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG13_ARATH7.876e-2941.33Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_RAT1.646e-1841.30Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_HUMAN1.646e-1842.03Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_MOUSE3.667e-1840.58Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_CANAL1.763e-1239.45Squalene monooxygenase OS=Candida albicans GN=ERG1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12D04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12D04-G8-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043630 ID=CX043630; Name=CX043630; organism=Citrus sinensis; type=EST; length=758bp
GTTTTTCTTTCTCTGGAGACTGAGACTTACAAATAGATATCCCTTTCAGT
TTTAAGATAATAAAGTATCATACAATACAATTATGGGATTGTTTGTATGA
TTTTATCCATCCTCGAAACCACAAATAATTATATAATGTCCACGTTCTTC
TGTTTTCTATCTTTTTACCCTTTTTAACAAAGGCAGTTTGCATATAAGAT
GTCCTTAAGGTTGATGGAGGTTCAGATACAAGAGGCACGTTCTTAATAGC
AACAAAGCCTCAGCTACATTGATTTTTGTTTGGTATGTCAATCCTCAACA
GGAGGGGCTCTGTAGACAGCAGGTATGGTGGCAGGGAAGAACATTTGCCT
CACTCCTTCGGCCTTAATGATGGGGAAAATGATACCTGATGCACCCGAAA
TTAACCTAGCTCCAATCCACATGCGCTTAGGTGAAGGAAACGGCAGTAGC
AAACGACCGACACCATATATTGCCACAGCAAAGAAATGAAGAACTAAACT
CAAGGGGCGAGGGTTTAGACCAGAAAGTAGAGCAACTGGTCCAGTTGAAA
AGACACCTCCAAGGCTTAAATAATCGAAACATGCTTGGCGCATTTCCTTC
CTTGCTTGATCAGGAGAAGAGGAAAACACCTTGTAAAGGGCACCTGCCAG
AGTATTTATTGTAGATGCCACTGGCTTGCGCAGGGTGTAAAAGGACTCAA
GATATCGGCCAAGAGAAGCTGCGTCGTTAAAGTCATGGAGTGGCTTAAGA
AGATTCCT
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