CX043567

Overview
NameCX043567
Unique NameCX043567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043567_ssr345 microsatellite CX043567_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:229..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.754e-49
Identity = 115/231 (49.78%), Postives = 141/231 (61.04%), Query Frame = -2
Query:  187 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSSNVHLMQTLTN----SSYQ----------MGGGSGEEDEDTPTGHRANALLPAWMLRHLH 837
            LLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMER+LERYERY +AERQL   +    G+WTLE++KLKAR+EVLQRNQKH++GEDL  L++KELQ++E Q+DS LK IRSRKNQLM +SIS                          ++            NH+ NSS   L Q L +     +YQ           GG S ++      G   N ++P WMLRHL+
Sbjct:   28 LLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVAQQNQWDQQ----NHEINSSTFVLPQQLDSPHLGEAYQNTNVVDNGEVEGGNSSQQQ-----GAANNTVMPQWMLRHLN 249          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.449e-47
Identity = 112/219 (51.14%), Postives = 138/219 (63.01%), Query Frame = -2
Query:  196 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSSNVHLMQTLTNSS-----YQMGGGSGEEDEDTPTGHRANALLPAWMLR 837
            LLKKAHEISVLCDAEVALIVFS+KGKLFEYSTDSCMERILERY+RY Y+++QL   ++  + NW LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+D+ +K IRSRKNQ M +SIS                                      QL    NSS+V L Q    SS      ++GG +G     T      N+LLPAWMLR
Sbjct:   28 LLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESIS------ALQKKDKALQDHNNSLLKKIKEREKKTGQQEGQLVQCSNSSSVLLPQYCVTSSRDGFVERVGGENGGASSLT----EPNSLLPAWMLR 236          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.295e-46
Identity = 91/125 (72.80%), Postives = 111/125 (88.80%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IRSRKNQLM  SI+
Sbjct:   28 LLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSIN 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.295e-46
Identity = 90/125 (72.00%), Postives = 112/125 (89.60%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IR+RKNQLM +SI+
Sbjct:   28 LLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESIN 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.919e-46
Identity = 93/125 (74.40%), Postives = 107/125 (85.60%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMERILERYERY +AE+QL   +     +WTLE+ KLKAR+EVLQRNQKH++GEDL  LS+KELQ++E Q+DS LK IRSRKNQLM +SIS
Sbjct:   28 LLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESIS 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.425e-46
Identity = 104/214 (48.60%), Postives = 133/214 (62.15%), Query Frame = -2
Query:  196 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLR 837
            LLKKAHEISVLCDAEVAL++FS+KGKLFEYSTDSCME+ILERY+RY Y+++QL   +I  + NW LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+ + +K IRSRKNQ M +SIS                                       +    NSS +     LT+S     G    E+E   +    N+LLPAWMLR
Sbjct:   28 LLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESIS-----ALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQLIQCSNNSSILQPQYCLTSSRDGFVGRVEGENEGASSLAEPNSLLPAWMLR 236          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.431e-45
Identity = 107/226 (47.35%), Postives = 135/226 (59.73%), Query Frame = -2
Query:  187 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSS---------NVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRHLH 837
            LLKKAHEISVLCDAEV LIVFSTKGKLFEY+TDSCMER+LERYERY +AE+QL   +    G+WTLE +KLKAR+EVLQRN+K ++GEDL  L++KELQ++E Q+ S LK IRSRKNQLM +SIS                          +             NH+ NSS         + HL +   N++    G     +     G   N ++P WM+RHL+
Sbjct:   28 LLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVEQQNQWDQQ----NHEINSSTFVLPQQLDSPHLGEASQNTNVVDNGEVEGGNSSQXQGAANNTVMPQWMVRHLN 249          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.285e-43
Identity = 86/125 (68.80%), Postives = 107/125 (85.60%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+EISVLCDAEVALI+FSTKGKL+EY+TDSCM++ILERYERY YAE+ L + E +  GNW  EY KLKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:   28 LLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.649e-43
Identity = 85/125 (68.00%), Postives = 107/125 (85.60%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+EISVLCDAEVALI+FSTKGKL++Y+TDSCM++ILERYERY YAE+ L + E +  GNW  EY KLKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:   28 LLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.934e-42
Identity = 84/127 (66.14%), Postives = 111/127 (87.40%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG--NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA EISVLCDAEV+LIVFS KGKLFEYS++SCME++LERYERY YAERQL A +   N   NW++EYS+LKA++E+L+RNQ+H++GE+L  +SLK+LQ++EQQ+++ LK IRSRKNQLM +S++
Sbjct:   28 LLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLN 154          
The following BLAST results are available for this feature:
BLAST of CX043567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
AGL8_SOLTU4.754e-4949.78Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH4.449e-4751.14Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AP1_SINAL1.295e-4672.80Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH1.295e-4672.00Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_SOLLC4.919e-4674.40Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SINAL6.425e-4648.60Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_SOLCO1.431e-4547.35Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD14_ORYSJ2.285e-4368.80MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI6.649e-4368.00MADS-box transcription factor 14 OS=Oryza sativa s... [more]
CAL_ARATH1.934e-4266.14Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_12A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A02-A4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043567 ID=CX043567; Name=CX043567; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTAGTACATATAACAAACCTTTTTACAGCTCTGGG
CATATAATATAACCATGTTAAGATGAGTGCTCGTCCATATACATATATCA
ATTTCTTGTTCTGATTAATTTCATTAAGCAAAATATGAATCGCACATACT
GATAGTAATCAAGAACTCATGATCTGTAAATTATTAATGAAGGTGACGAA
GCATCCAAGCGGGCAGCAAAGCGTTAGCTCGATGTCCTGTCGGAGTATCC
TCGTCCTCCTCTCCGCTGCCCCCTCCCATTTGGTAAGAGCTATTGGTCAA
TGTCTGCATTAAATGAACATTGGATGAGTTCCAGTCATGATTTAGCTGCT
GCTGCTGTTCCCTGCACTGCGCCTCTTGGCTCAGTAGCTTCTCCTTTTCT
TTTACCTTCTTTGCAAGCAAGTTGTTTTGCTCTTTCAATAACTTGTCCTT
TTTCTGAAGCTCTGAAATGGATTGAAGCATGAGTTGGTTCTTTCTTGATC
GAATGAGTTTAAGACCAGAATCAATCTGCTGCTCTACACTTTGAAGCTCT
TTGAGACTTAAGTCTGCAAGATCCTCTCCCATGAAATGCTTTTGATTTCT
TTGTAAAACCTCCATCCTAGCTTTAAGCTTGGAATATTCCAATGTCCAGT
TTCCATTTGGTTCAATCTCATTTGCTTGAAGCTGCCTCTCCGCATAACAA
TACCTCTCATATCGTTCAAGGATTCTTTCCATGCATGAATCAGTAGAGTA
TTCAAAGAGTTTGCCTTTAGTGGAGAAGACGATCAAAGCAACTTCAGCGT
CACAAAGCACAGAGATCTCATGGGCTTTTTTCAATAAA
back to top