CX043486

Overview
NameCX043486
Unique NameCX043486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043486_ssr16 microsatellite CX043486_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
CX043486_ssr169 microsatellite CX043486_ssr169:169..183. BLAST: Citrus ESTs to Prunus persica proteins V1
CX043486_ssr198 microsatellite CX043486_ssr198:198..209. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5981 contig Csv1_Contig5981:113..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043486 vs. ExPASy Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 5.854e-57
Identity = 107/157 (68.15%), Postives = 127/157 (80.89%), Query Frame = 1 
Query:  238 TPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 705
            T DFP+QK  G +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+L+K                EQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV CN +LVFSKLKEGRFPGEIEL+DL++
Sbjct:   42 TLDFPAQKSTG-VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLIS 197
[Close]
BLAST of CX043486 vs. ExPASy Swiss-Prot
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.014e-16
Identity = 44/145 (30.34%), Postives = 71/145 (48.97%), Query Frame = 1 
Query:  292 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 726
            V  +FC SC YR       ++L  ++PGID+   NYPP + + + ++                   FP LG+  P ++  + +NR  +    +L  N ++  LQS+GAFE+Y   + ++SKL+ GR P   EL   +   LA  R
Sbjct:   83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCVVSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWSKLESGRVPSPPELFQAIDSHLAIRR 227
[Close]
BLAST of CX043486 vs. ExPASy Swiss-Prot
Match: SELT_DROME (SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13
Identity = 47/148 (31.76%), Postives = 67/148 (45.27%), Query Frame = 1 
Query:  271 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 714
            G     T+   +C SC YR        +L  ++P I V   NY PP     LSK                   F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  ND  V+SKL+ GRFP    L  ++   L
Sbjct:   37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHL 184
The following BLAST results are available for this feature:
BLAST of CX043486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SELT_ARATH5.854e-5768.15SelT-like protein OS=Arabidopsis thaliana GN=At3g4... [more]
HSP6_HETGL5.014e-1630.34Putative esophageal gland cell secretory protein 6... [more]
SELT_DROME1.783e-1331.76SelT-like protein OS=Drosophila melanogaster GN=CG... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11D03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11D03-G5-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043486 ID=CX043486; Name=CX043486; organism=Citrus sinensis; type=EST; length=812bp
CACAGTCGATATATTTTCTTCTTCTTCGAATTGTTGTTTTTCTTTCACAG
ACTCGTAAAATCCCAACAAAATCATAGTTTTAATCTACAAATGGATCGGC
TAAATATCCTTCTTCTGGGTCTCCCTCTCTTTCTTCTCTGCAGCGACCTC
TTAAATCTTTTCACTCCTCCGCCGCCGCCGCCGCCAAAATCCGCTTCCCA
CCACCACCATAAACCGCCTATACCTTCGGAAAACCTAACCCCAGACTTTC
CTTCACAGAAAATTGTCGGAGGAATTGGGTATGGCAGTACTGTTAATATC
AACTTTTGTGCTTCTTGCTCTTATAGGGGCACTGCAATAACAATGAAAAG
GATGTTGGAGACTCAGTTTCCTGGGATTGATGTGGTCCTTGCAAATTATC
CCCCACCCCTGCCAAAGCGTCTACTTTCTAAAGTGGTGCCTGCTGTTCAG
ATAGGGGTTATTGGGATCGTAGTGGCAGGCGAACAGATTTTTCCGATGCT
GGGAATGACACCACCTCCATGGTATTATTCGCTGCGTGCCAATAGGTTTG
GGTCCATAGCATCTACCTGGCTTATTGGAAACTTTTTGCAGTCCTTCCTC
CAAAGCTCTGGGGCTTTTGAAGTTTACTGTAATGATGACTTGGTCTTCTC
TAAACTGAAGGAGGGGAGGTTTCCAGGCGAGATTGAGCTAAAAGATCTTG
TTGCCAAACAATTGGCTTCATCAAGACTTGTGGATGGTGTTGGAAGTGTA
TGGTCCTAGTTCATTCACTGGACATTGAGGGGTGGAATCAAAGGATTGAC
TGAGAGCCTTGT
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