DC900234

Overview
NameDC900234
Unique NameDC900234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900234_ssr345 microsatellite DC900234_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4248 contig Csv1_Contig4248:316..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: MFT_ARATH (Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.199e-31
Identity = 62/80 (77.50%), Postives = 74/80 (92.50%), Query Frame = 3
Query:    3 GTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGL-VEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 239
            GTNP++G EILPYM PRPPVGIHRYI+VLF+Q +P+GL V+QPP+RANF+TR+FAG+ DLGLPVAT+YFN QKEPASRRR
Sbjct:   94 GTNPSRGKEILPYMEPRPPVGIHRYILVLFRQNSPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKEPASRRR 173          
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: CEN_ARATH (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.295e-15
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    6 TNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 239
            T+ + G EI+ Y  PRP +GIHR++ +LF+Q     +V  P  R  FNTR FA   DLGLPVA ++FNCQ+E A+RRR
Sbjct:   98 TDVSFGKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175          
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: TFL1_ARATH (Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.885e-15
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    6 TNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 239
            T+   G E++ Y  PRP +GIHR++ VLF+QK    +    P+R +FNTR FA   DLGLPVA ++FN Q+E A+R+R
Sbjct:  100 TDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177          
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.428e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:    6 TNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 239
            T+ + G EI+ Y  PRP +GIHR++ +LF+QK    ++  P +R  FNTR FA   +LG PVA ++FNCQ+E A+RRR
Sbjct:   98 TDCSFGKEIVGYEMPRPNIGIHRFVFLLFKQKKRQTVLTAPLSRDRFNTRKFAEENELGSPVAAVFFNCQRETAARRR 175          
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.432e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    6 TNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 239
            T+ + G EI+ Y  PRP +GIHR++ +LF+QK    L+  P +R  FNTR F+   +LG PVA  +FNCQ+E A+RRR
Sbjct:   98 TDCSFGREIVGYEMPRPNIGIHRFVFLLFKQKKRQTLLSAPLSRDRFNTRKFSEENELGSPVAAAFFNCQRETAARRR 175          
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: CEN_ANTMA (Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.443e-14
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    6 TNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPT--RANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 239
            T+ + G E++ Y  PRP +GIHR++ +LF+QK     +  PP   R  FNTR F    +LGLPVA ++FNCQ+E A+RRR
Sbjct:  102 TDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181          
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    6 TNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 239
            T+ + G E++ Y  PRP +GIHR++ +LF+QK    +   P +R  F++R F+   +LG PVA ++FNCQ+E A+RRR
Sbjct:   98 TDCSFGREVVGYEMPRPNIGIHRFVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRETAARRR 175          
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.026e-12
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 3
Query:    6 TNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 239
            T+ + G EI+ Y  P+P +GIHRY+++L++Q      V+   TR +FNTR +     LG PVA +YFN Q+E A+RRR
Sbjct:   98 TDSSFGREIVSYESPKPVIGIHRYVLLLYKQSGRQ-TVKPAATRDHFNTRRYTAENGLGSPVAAVYFNAQRETAARRR 174          
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: BFT_ARATH (Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.026e-12
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 3
Query:    6 TNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 239
            T+ + G EI+ Y  P+P  GIHRY+  LF+Q+    +   P TR  FNT  F+    L  PVA +YFN Q+E A RRR
Sbjct:   97 TDASFGREIVRYETPKPVAGIHRYVFALFKQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPRRR 174          
BLAST of DC900234 vs. ExPASy Swiss-Prot
Match: TSF_ARATH (Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 40/74 (54.05%), Postives = 47/74 (63.51%), Query Frame = 3
Query:    6 TNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLG--LVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 221
            T  A G E++ Y  PRPP GIHR ++VLF+Q   LG   V  P  R  FNTR FA   +LGLPVA  YFNCQ+E
Sbjct:   97 TGNAFGNEVVCYESPRPPSGIHRIVLVLFRQ---LGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQRE 167          
The following BLAST results are available for this feature:
BLAST of DC900234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MFT_ARATH2.199e-3177.50Protein MOTHER of FT and TF 1 OS=Arabidopsis thali... [more]
CEN_ARATH1.295e-1551.28Protein CENTRORADIALIS-like OS=Arabidopsis thalian... [more]
TFL1_ARATH2.885e-1548.72Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana ... [more]
CET2_TOBAC6.428e-1548.72CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE... [more]
CET4_TOBAC1.432e-1448.72CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE... [more]
CEN_ANTMA2.443e-1447.50Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN... [more]
SELFP_SOLLC2.068e-1343.59Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP... [more]
CET1_TOBAC1.026e-1244.87CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE... [more]
BFT_ARATH1.026e-1244.87Protein BROTHER of FT and TFL 1 OS=Arabidopsis tha... [more]
TSF_ARATH5.093e-1254.05Protein TWIN SISTER of FT OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionDC900234 VSS Citrus sinensis cDNA clone VS28274 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900234 ID=DC900234; Name=DC900234; organism=Citrus sinensis; type=EST; length=507bp
GTGGCACTAACCCCGCTCAAGGGATGGAGATTCTGCCGTACATGGGGCCA
CGGCCACCGGTGGGGATTCATCGATACATAATGGTGCTGTTTCAGCAGAA
GGCTCCATTGGGGCTGGTCGAGCAGCCACCAACGAGGGCTAACTTCAACA
CTCGGCTCTTTGCTGGGAATCTGGATCTTGGCCTCCCTGTGGCCACTATT
TACTTCAACTGTCAGAAGGAACCGGCAAGCCGCAGGCGTTGAACAATCAA
GGAGGCGCTAGCTAGTGCTCAGCTCAAGTGTAATAGACAAAGAGAGTTGT
GGTGTCTTTAATATGTTTCTCTTTTGGTTTTGGTTTTCCTTTTCCTTTCT
TTCTTTTTTTTTCCCCGCAAGTGTACTGTCTCGTTTTAGTCTTAGCATGT
AGGTGTTGGCTTTGTTTAATCAGGCTAAAGTTCATGTAATGTAAGCTGTT
TCCCTTGTAATAAGCTTTCGTTTCAATAGAAAAAAAAATCTGTTTTGTCT
GTTTTTC
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