CX043461

Overview
NameCX043461
Unique NameCX043461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1669 contig Csv1_Contig1669:18..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 6.868e-82
Identity = 141/222 (63.51%), Postives = 174/222 (78.38%), Query Frame = 3
Query:  144 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            G  + +NL+ AIN  + IA++ D +A             RCT GL D++G SRVFNTPLCEQGI GFAIGLAA G   IAEIQFADYIFPAFDQIVNEAAK+RYRSG QF+CG LT+R+PYGAVGHGGHYHSQSPE++F H PGLKVVIP +P +AKGLLL+ IR+ +PV+FFEPK +YR +VEEVP  DY +PL +A +++EG DIT++GWGAQ+ ++ QA
Sbjct:   44 GEKQKMNLFQAINNGMDIAMQKDSKAVVFGEDVGFGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMYRSAVEEVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQA 265          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 301.982 bits (772), Expect = 2.610e-81
Identity = 144/221 (65.16%), Postives = 169/221 (76.47%), Query Frame = 3
Query:  144 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQ 806
            G  + +NL+ +I  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR +VE+VP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +
Sbjct:   64 GQTQKMNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIRE 284          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 2.610e-81
Identity = 144/221 (65.16%), Postives = 169/221 (76.47%), Query Frame = 3
Query:  144 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQ 806
            G  + +NL+ +I  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR +VE+VP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +
Sbjct:   64 GQTQKMNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIRE 284          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 5.814e-81
Identity = 142/221 (64.25%), Postives = 169/221 (76.47%), Query Frame = 3
Query:  144 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQ 806
            G  + +NL+ A+  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P+G VGHG  YHSQSPEAFF H PG+KVV+PRSP QAKGLLLSCI D NP +FFEPK LYR +VE+VP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +
Sbjct:   66 GQTQKMNLFQAVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIRE 286          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.692e-80
Identity = 142/221 (64.25%), Postives = 168/221 (76.02%), Query Frame = 3
Query:  144 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQ 806
            G  + +NL+ ++  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR + EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +
Sbjct:   66 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIRE 286          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.545e-52
Identity = 111/218 (50.92%), Postives = 138/218 (63.30%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTT-GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            + +  A+N+AL   +  DPR                 T GL  ++G  RV +TPL E  IVG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF    L VR P G    GGH+HSQSPEA F H  GLKVV   +P  AKGLL + IRD +PVVF EPK LYR   EEVPE+DY LP+ +A + REG D+TL+G+G  +  + QA
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVLQA 220          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.155e-51
Identity = 110/218 (50.46%), Postives = 137/218 (62.84%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTT-GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            + +  A+N+AL   +  DPR                 T GL  ++G  RV +TPL E  IVG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF    L VR P G    GGH+HSQSPEA F H  GLKVV   +P  AKGLL + IRD +PVVF EPK LYR   EEVPE+DY L + +A + REG D+TL+G+G  +  + QA
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLSIGKAALRREGKDLTLIGYGTVMPEVLQA 220          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.932e-50
Identity = 105/218 (48.17%), Postives = 139/218 (63.76%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            ++   AIN A+   +E D R +             + T GL ++FG+ RV +TPL E  I G  IG A  G R IAE+QFAD+I PA +QI++EAAK RYRS N ++C  + VRAPYG   HG  YHSQS EA F + PGLK+V+P +P  AKGLL + +RD +PV+FFE K  YRL   EVP DDY+LP+ +A+V REG DIT++ +G  +    QA
Sbjct:    4 MSYIDAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSCP-IVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAYRLIKGEVPADDYVLPIGKADVKREGDDITVITYGLCVHFALQA 220          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.160e-43
Identity = 92/218 (42.20%), Postives = 135/218 (61.93%), Query Frame = 3
Query:  159 LNLYSAINQALHIALETDPR-AYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            + L  AINQA+  A+E D                 R T GL  ++G++RVF+TP+ E  IVG A+G+A  G + IAEIQF  +IFP +  +V  AA+ R RS  QF    + +R P+G       +HS++ E  F  +PGLKVV P +P  AKGLLL+ I DP+PVVF EPK +YR   +EVP + Y +P+ +A+V+++G+D+T+V WG+ +  +E+A
Sbjct:    4 ITLLEAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAEIQFDGFIFPGYTDLVTHAARMRNRSRGQFTVP-MVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVFLEPKRIYRAGKQEVPAEMYEIPIGKAKVVKQGTDMTVVAWGSIVREVEKA 220          
BLAST of CX043461 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.811e-43
Identity = 93/235 (39.57%), Postives = 136/235 (57.87%), Query Frame = 3
Query:  156 SLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY----------------RLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 809
            S+ +  A+  A+ I LE D                 RCT GL  ++G SRVF+ P+ E GI+G A+G+ A G R + EIQFADY++PA DQ+++EAA+ RYRS   F    +TVR P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++CI + +PV+F EPK LY                +    +VP+  Y +PL +A ++R G+ +T++ +G  + + + A
Sbjct:   16 SMTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDF-IVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAA 249          
The following BLAST results are available for this feature:
BLAST of CX043461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBB_DICDI6.868e-8263.512-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT2.610e-8165.162-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE2.610e-8165.162-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN5.814e-8164.252-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN1.692e-8064.252-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_THET82.545e-5250.922-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET22.155e-5150.462-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_BACSU6.932e-5048.172-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODPB_ACHLA2.160e-4342.20Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEAE4.811e-4339.572-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11B12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B12-C23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043461 ID=CX043461; Name=CX043461; organism=Citrus sinensis; type=EST; length=813bp
GCAAACTCCACAACCAAAAATCTTGGCGGAGATTTCACAATATGGCTTCT
GGTTTGAGAAGATTTGTGGGTTCCCTTTCACGGAGAAATCTTTCAACTGC
TTGTGCGAACAAGCAGCTAATTCAACAACACGATGGGGGTGTTGGCAGTG
GCAAGTCTTTGAATTTGTACTCTGCCATCAACCAGGCTCTTCATATTGCT
TTGGAAACTGATCCACGTGCTTATGTGTTTGGAGAAGATGTGGGCTTTGG
TGGAGTCTTCCGATGCACGACAGGATTAGCTGATCGATTTGGTAAAAGTC
GGGTATTCAATACCCCTCTTTGTGAACAGGGCATCGTTGGGTTTGCCATT
GGTCTGGCAGCTATGGGAAATCGAGCTATAGCTGAAATTCAATTTGCAGA
TTATATTTTTCCAGCTTTTGATCAGATTGTCAATGAAGCTGCTAAGTTCA
GATACAGGAGTGGAAATCAATTTAATTGTGGAGGATTAACAGTAAGAGCC
CCTTACGGAGCTGTGGGCCATGGTGGACACTATCACTCGCAATCTCCTGA
AGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTGGTCATCCCTCGAAGCC
CACGACAAGCAAAAGGATTATTGCTGTCATGCATTCGTGATCCGAACCCT
GTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTTTGTCTGTAGAAGAGGT
TCCTGAGGATGATTATATGTTGCCTTTATCAGAGGCAGAGGTGATTCGAG
AAGGCAGTGACATAACACTTGTTGGCTGGGGAGCACAACTCTCTATCATG
GAGCAGGCCTGTT
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