CX043415

Overview
NameCX043415
Unique NameCX043415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13083 contig Csv1_Contig13083:148..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043415 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.267e-26
Identity = 75/154 (48.70%), Postives = 94/154 (61.04%), Query Frame = 1
Query:  106 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVS----DNSGQDVSARNMAAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQVIVFNDFPADKANEIMQLASNGSSLS 534
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP      D+  QDV           +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVIVFNDF A+KA E++ LAS G++ S
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFPCEASNMDSMVQDV-----------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANS 160          
BLAST of CX043415 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23
Identity = 72/198 (36.36%), Postives = 104/198 (52.53%), Query Frame = 1
Query:  109 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMIDSSLNK-------PAPQTAQMTIFYGGQVIVFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPV------ESTPPVSPGPPKIPTE 663
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D SA       + +   +FP+Q+ F+  + +    D  + K       P  Q+A +TIFYGG+V+VF+DF A+KA E++ LA+ GS+ S       +      Y+    +   +PV       +  P+ P P  +  E
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFPC-EASGMDSSA----GQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACE 202          
BLAST of CX043415 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.112e-14
Identity = 53/149 (35.57%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  103 PEKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQD--VSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMID-SSLNKPAPQT--AQMTIFYGGQVIVFNDFPADKANEIMQLASNGSSLS 534
            PEKS+FSQ CSLLS+YLKE GSFG++++G++                 + + L    D  GQ   +     +  R ++ +  F          D    ID S   K AP++  +Q+TIF+GG+V+VFN+FP DKA EIM++A   + ++
Sbjct:    7 PEKSNFSQRCSLLSRYLKEKGSFGNINMGLARK---------------SDLELAGKFDLKGQQNVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVA 140          
The following BLAST results are available for this feature:
BLAST of CX043415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TI10A_ARATH1.267e-2648.70Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH2.920e-2336.36Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH1.112e-1435.57Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10H09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10H09-P18-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043415 ID=CX043415; Name=CX043415; organism=Citrus sinensis; type=EST; length=761bp
TGCAGCGCACTAGTTTTATTTATTTTTGCTTGTGGGTTTCCGCTTCTGAG
TTGGTTAAACACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACT
TGCCGGAGAAATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTAC
TTGAAAGAGGGAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAA
CATTGAAGCTAATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAA
CTATGAATTTGTTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGCT
CGAAACATGGCAGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCA
ACAAGCTGGTTTTGCTCCTAAGAATGATACCCCTAACATGATAGATTCAA
GTTTAAACAAGCCCGCTCCGCAAACTGCTCAAATGACTATATTTTATGGC
GGACAAGTGATTGTGTTCAATGATTTTCCTGCTGATAAAGCAAATGAAAT
CATGCAATTAGCAAGCAACGGGAGCTCACTGAGCCATGGTACCGCTTATC
CTCCTATGCAACTGCCGGCCCAGGGTTACAACTCTTTTGCTGCTAGTTTA
CCCAAAAGTCCAGTTGAATCAACTCCCCCGGTTTCTCCTGGCCCCCCAAA
AATTCCAACAGAGCCTAGTTGCTCGGTTCCTCCTCGATCAAATAGCATTC
CTAACTTTGGCAACAATCTAATTCCAGAACGCGCTCAACCTCCCTCGAGA
CCTTGTGATCT
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