DC900193

Overview
NameDC900193
Unique NameDC900193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1131
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 4.758e-40
Identity = 82/105 (78.10%), Postives = 86/105 (81.90%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           GESIYG+KFADENF+ K  GPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFGQVVEGMDVVKAI KVGSSSGRT K VV+ DCGQLS
Sbjct:   68 MCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 4.453e-38
Identity = 77/105 (73.33%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           GESIYG+KF DENF+ K  GPG+LSMANAGPGTNGSQFF+CT KT WLDGKHVVFGQVVEGMDVV+AI KVGS SG+T KPV I DCGQLS
Sbjct:   46 MCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.597e-38
Identity = 78/104 (75.00%), Postives = 83/104 (79.81%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           GESIYG+KF DENFV K  GPGILSMANAGPGTNGSQFF+CTAKTEWL+GKHVVFGQVVEGMDV+K    VGSSSGR +KPVVI DCGQL
Sbjct:   68 MCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.887e-37
Identity = 77/105 (73.33%), Postives = 82/105 (78.10%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           GESIYGSKF DENF  K  GPGILSMANAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAI KVGSSSG+  KPVV+ DCGQLS
Sbjct:   68 MCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.871e-36
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ            ESIYG+KFADENF+ +  GPGILSMANAG GTNGSQFF+CT KTEWLDGKHVVFG+V+EGM+VV+ I KVGS SG+T++PV I DCGQLS
Sbjct:   68 MCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.871e-36
Identity = 75/105 (71.43%), Postives = 82/105 (78.10%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           GESIYGSKF DENF+ K  GPGILSMANAG  TNGSQFF+CT KT WLDGKHVVFGQVVEG++VV+ I KVGS SGRT+KPVVI DCGQ+S
Sbjct:   69 MCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.444e-36
Identity = 74/105 (70.48%), Postives = 82/105 (78.10%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           GESIYG+KF DENF  K  GPGILSMANAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAI K+GSSSG+  KPVVI DCG++S
Sbjct:   69 MCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.529e-35
Identity = 73/105 (69.52%), Postives = 81/105 (77.14%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           GESIYG+KF DENF+ K  G GILSMAN+GP TNGSQFF+CT KT WLDGKHVVFGQVV+G+DVVKAI KVGS SG+T+K V I DCGQLS
Sbjct:   68 MCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.341e-34
Identity = 74/104 (71.15%), Postives = 77/104 (74.04%), Query Frame = -2
Query:  285 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQL 596
            MCQ           GESIYG KF DENFV K  GPGILSM NAG  TNGSQFF+CT KT WLDGKHVVFGQVVEGMDVV+ I KVGS SGRT+K VV  DCGQL
Sbjct:   68 MCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of DC900193 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.751e-34
Identity = 71/105 (67.62%), Postives = 78/105 (74.29%), Query Frame = -2
Query:  282 MCQXXXXXXXXXXXGESIYGSKFADENFVXKXXGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIXKVGSSSGRTNKPVVIXDCGQLS 596
            MCQ           G+SIYGS+F DENF  K  GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK I   GS SGRT+K +VI DCGQLS
Sbjct:  103 MCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
The following BLAST results are available for this feature:
BLAST of DC900193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CYPH_CATRO4.758e-4078.10Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_ALLCE4.453e-3873.33Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CYPH_SOLLC7.597e-3875.00Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CP18C_ARATH2.887e-3773.33Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYPH_LUPLU1.871e-3668.57Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH1.871e-3671.43Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP19B_ARATH2.444e-3670.48Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18D_ARATH3.529e-3569.52Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_BRANA1.341e-3471.15Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
PPIF_HUMAN1.751e-3467.62Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionDC900193 VSS Citrus sinensis cDNA clone VS28229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900193 ID=DC900193|Name=DC900193|organism=Citrus sinensis|type=EST|length=1131bp
CGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAA
GACAAGCCCTATNTTATTTAAAANGGCAGCTCATAGAAAGACATAAAAAA
CAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAA
CATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACNCGGCCACA
TAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGNG
ATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCA
GNGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTNTC
GATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGT
GCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGAT
CCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGN
GNGCTTNTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGATTGATT
CGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGCTC
GTGCCGAATTCGGCACGAGGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGT
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