CX043309

Overview
NameCX043309
Unique NameCX043309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043309 vs. ExPASy Swiss-Prot
Match: PAO5_ARATH (Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.074e-71
Identity = 141/238 (59.24%), Postives = 170/238 (71.43%), Query Frame = 2
Query:   83 MAKKPRIVIIGAGMAGLTAANKLYTTPSSKDLFELCVVEAGTRIGGRINTSEFGGDRIEMGATWIHGIGGSPIYKISQEINSLESHQPWECMDGFSSQRTTVAEGGFEVNPSIVEPVSSLFDSLMDYAQGKLSEESTSCEKAEFCKLTCKAFKICXXXXXXXXXXXXVGSFLRQGLNSYWDFLKE--QDELKGYGTWSRKLLEESIFAMNENTQRTYTSAGDLMTLDFTAESEYQMFP 790
            MAKK RIVIIGAGMAGLTAANKLYT  SS + FEL VVE G+RIGGRINTSEF  ++IEMGATWIHGIGGSP+Y+I++E  SL S +PWECMD    +  T AEGGFE+ PSIVE +S LF +LM+ AQGK   +S   + +    +   A ++C            VGSFL+ G ++YWD +    ++ +KGYG WSRK LEE+IF M  NTQRTYTSA +L TLDF AESEYQMFP
Sbjct:    1 MAKKARIVIIGAGMAGLTAANKLYT--SSNNTFELSVVEGGSRIGGRINTSEFSSEKIEMGATWIHGIGGSPVYRIAKETGSLVSDEPWECMDSTIDKAKTFAEGGFEIEPSIVESISGLFTALMELAQGKEISQS-DADLSRLAHIYETATRVC-----SKGSSTSVGSFLKSGFDAYWDSISNGGEEGVKGYGKWSRKSLEEAIFTMFSNTQRTYTSADELSTLDFAAESEYQMFP 230          
BLAST of CX043309 vs. ExPASy Swiss-Prot
Match: SMOX_MOUSE (Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 2
Query:   92 KPRIVIIGAGMAGLTAANKLYTTPSSKDLFELCVVEAGTRIGGRINTSEFGGDRIEMGATWIHGIGGSPIYKISQEINSLESHQPWECMDGFSSQRTT------VAEGGFEVNPSIVEPVSSLFDSLMDYAQ 469
            +PR+V+IGAG+AGL AA  L      +   ++ V+EA + IGGR+ +   G    E+GATWIHG  G+PIY++++    LE     E   G  S  +       +   G  +   +VE  S L++ + +  Q
Sbjct:   24 QPRVVVIGAGLAGLAAARALL----EQGFTDVTVLEASSHIGGRVQSVRLGDTTFELGATWIHGSHGNPIYQLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNRGCRIPKDVVEEFSDLYNEVYNMTQ 151          
BLAST of CX043309 vs. ExPASy Swiss-Prot
Match: SMOX_HUMAN (Spermine oxidase OS=Homo sapiens GN=SMOX PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 2
Query:   92 KPRIVIIGAGMAGLTAANKLYTTPSSKDLFELCVVEAGTRIGGRINTSEFGGDRIEMGATWIHGIGGSPIYKISQEINSLESHQPWECMDGFSSQRTT------VAEGGFEVNPSIVEPVSSLFDSLMDYAQ 469
            +PR+V+IGAG+AGL AA  L      +   ++ V+EA + IGGR+ + + G    E+GATWIHG  G+PIY +++    LE     E   G  S  +       +   G  +   +VE  S L++ + +  Q
Sbjct:   24 QPRVVVIGAGLAGLAAAKALL----EQGFTDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNEVYNLTQ 151          
BLAST of CX043309 vs. ExPASy Swiss-Prot
Match: PAOX_BOVIN (Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Bos taurus GN=PAOX PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 50/157 (31.85%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   74 ATVMAKKPRIVIIGAGMAGLTAANKLYTTPSSKDLFELCVVEAGTRIGGRINTSEFGGDRIEMGATWIHGIG-GSPIYKISQEINSL------ESHQPWECMDGFSSQRTTVAEGGFEVNPSIVEPVSSLFDSLMDYAQGKL-SEESTSCEKAEFCK 520
            A    + PR++++G G+AGL AA +L   P+      L V+EA  R GGRI +    G  +E+GA WIHG   G+P+++++ +   L      E +Q  E          + A  G  V+  +V  ++SLF SL+D  +  L + E+T     E+ K
Sbjct:    8 AEAPGRGPRVLVVGGGIAGLGAAQRLCRHPAFS---HLRVLEATARAGGRIRSEHSFGGVVEVGAHWIHGPSQGNPVFQLAAKYGLLGEKALSEENQLIETGGHVGLPSVSYASSGVSVSLELVAEMASLFYSLIDQTREFLQAAETTPPSVGEYLK 161          
The following BLAST results are available for this feature:
BLAST of CX043309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PAO5_ARATH3.074e-7159.24Probable polyamine oxidase 5 OS=Arabidopsis thalia... [more]
SMOX_MOUSE6.514e-1333.33Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1[more]
SMOX_HUMAN1.895e-1233.33Spermine oxidase OS=Homo sapiens GN=SMOX PE=1 SV=1[more]
PAOX_BOVIN2.095e-1131.85Peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10B12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B12-D24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043309 ID=CX043309; Name=CX043309; organism=Citrus sinensis; type=EST; length=794bp
CTCATATTCCTGATTCCTCTCTCTTTTTTCCTGTATTTCGTGTGTGTGCT
ACCTAGTGAAGTTAGCCAAGCTCGCAACAGTAATGGCTAAGAAGCCAAGA
ATTGTCATAATTGGAGCAGGAATGGCTGGTCTTACAGCTGCTAATAAACT
CTACACTACCCCTAGCTCTAAAGACTTGTTTGAGCTTTGTGTTGTGGAAG
CTGGCACAAGAATTGGTGGGAGAATCAACACTTCTGAGTTTGGGGGTGAC
AGAATTGAGATGGGGGCAACATGGATCCATGGCATTGGAGGCAGCCCAAT
TTACAAAATTTCTCAAGAAATCAATTCACTTGAGTCTCATCAGCCATGGG
AATGCATGGACGGTTTCTCTAGCCAGCGTACGACCGTTGCTGAAGGTGGT
TTTGAGGTTAATCCGTCTATTGTAGAGCCTGTATCGTCTCTTTTTGACAG
CCTCATGGATTATGCTCAGGGGAAGCTCTCTGAAGAAAGTACCAGCTGTG
AAAAAGCTGAATTTTGCAAACTTACTTGTAAAGCTTTCAAGATTTGTAGT
AGCAGCAATGGTGACTCATCTGGTAAGCTTAGTGTTGGTTCTTTTCTTAG
ACAAGGTCTTAATTCTTATTGGGATTTCTTGAAAGAGCAAGATGAGCTTA
AAGGATATGGTACTTGGAGCAGAAAGTTGCTTGAAGAATCCATTTTTGCT
ATGAATGAAAACACTCAGAGGACTTACACTTCTGCTGGGGATCTGATGAC
TCTAGATTTTACGGCAGAAAGTGAGTACCAAATGTTTCCTGATG
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