CN186079

Overview
NameCN186079
Unique NameCN186079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11761 contig Csv1_Contig11761:938..1324. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186079 vs. ExPASy Swiss-Prot
Match: TRPD_ARATH (Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.647e-13
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = -2 
Query:  127 LQGGGPAYNAEVLRRVLSGERGPXXXXXXXXXXXXXXVSCKVNPLPGGVPLAREIQFSGKALNPPDFWIEVS 342
            L+GGGP YNA+VLRRVLSGE G               VS +V  L  GV +ARE+Q SGKA+   D WI +S
Sbjct:  366 LRGGGPDYNADVLRRVLSGESGAIADSLILNAAAALLVSNRVQTLAEGVTVAREVQSSGKAIKTLDSWINIS 437

HSP 2 Score: 31.5722 bits (70), Expect = 1.647e-13
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = -1 
Query:  347 FDPLD*GIPRCTLE 388
            FDPLD GIPRCTLE
Sbjct:  351 FDPLDFGIPRCTLE 364
The following BLAST results are available for this feature:
BLAST of CN186079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TRPD_ARATH1.647e-1350.00Anthranilate phosphoribosyltransferase, chloroplas... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002F09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186079 ID=CN186079; Name=CN186079; organism=Citrus sinensis; type=EST; length=388bp
TGATCCACAAGACGTGCCTAAGGAAGCCAACTTTTGACCTACCTGTTATT
CATGGAACTGCAATGAAGTCTTTCTTAGGGTTCAAAACTCCATTACTCAA
GCACAAGCAAAAGGGGGCGCCCCCTTTGAGACTTCTATCCAAAAATCCGG
GGGATTAAGAGCTTTCCCTGAAAATTGAATTTCACGGGCCAGGGGTACAC
CCCCGGGCAAGGGGTTCACTTTGCAACTGACCAACAGGGCTGCTGCAACA
TTTAGGATTAATGCATCAGCTATTGGCCCTCTTTCTCCAGACAGTACACG
CCTTAAGACCTCCGCATTATATGCTGGGCCTCCACCTTGGAGAGCTTTCC
AAAGTGCAGCGCGGAATGCCCTAGTCCAATGGATCAAA
back to top