CN186002

Overview
NameCN186002
Unique NameCN186002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9434 contig Csv1_Contig9434:814..1539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLPT1_MOUSE (Cleft lip and palate transmembrane protein 1 homolog OS=Mus musculus GN=Clptm1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = -3
Query:  479 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGED 724
            M PQLFINYKLKSVAHLPWR +TYK LNT IDDLFAFVIKMP ++R+   RDD+VF IYLYQRWIY+VD TRVNEFG +GED
Sbjct:  523 MTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSGED 604          
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLPT1_HUMAN (Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = -3
Query:  479 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGED 724
            M PQLFINYKLKSVAHLPWR +TYK LNT IDDLFAFVIKMP ++R+   RDD+VF IYLYQRWIY+VD TRVNEFG +GED
Sbjct:  523 MTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSGED 604          
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLPT1_BOVIN (Cleft lip and palate transmembrane protein 1 homolog OS=Bos taurus GN=CLPTM1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.407e-32
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = -3
Query:  482 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGE 724
            M PQLFINYKLKSVAHLPWR +TYK LNT IDDLFAFVIKMP ++R+   RDD+VF IYLYQRWIY+VD TRVNEFG +GE
Sbjct:  523 MTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSGE 603          
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLPT1_DANRE (Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = -3
Query:  479 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGED 724
            M PQLFINYK+KSVAHLPWR +TYK LNT IDDLFAFVIKMP ++R+   RDD+VF IYLYQRWIY+VD  RVNEFG +G D
Sbjct:  521 MTPQLFINYKMKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPMMYRIGCLRDDVVFFIYLYQRWIYRVDPNRVNEFGTSGVD 602          
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLP1L_BOVIN (Cleft lip and palate transmembrane protein 1-like protein OS=Bos taurus GN=CLPTM1L PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = -3
Query:  479 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGED 724
            M PQLF+NYK+KSVAHLPW+  TYK  NT IDD+FAF+I MPT HRL+ FRDD+VFL+YLYQRW+Y VDK+RVNEFG + ED
Sbjct:  448 MLPQLFVNYKMKSVAHLPWKAFTYKAFNTFIDDVFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYPVDKSRVNEFGESYED 529          
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLP1L_PONAB (Cleft lip and palate transmembrane protein 1-like protein OS=Pongo abelii GN=CLPTM1L PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = -3
Query:  449 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGEDDKVSDGTETD 724
            M PQLF+NYKLKSVAHLPW+  TYK  NT IDD+FAF+I MPT HRL+ FRDD+VFL+YLYQRW+Y VDK RVNEFG + E +K +    TD
Sbjct:  448 MLPQLFVNYKLKSVAHLPWKAFTYKAFNTFIDDVFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYPVDKRRVNEFGESYE-EKAARAPHTD 538          
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLP1L_HUMAN (Cleft lip and palate transmembrane protein 1-like protein OS=Homo sapiens GN=CLPTM1L PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = -3
Query:  449 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGEDDKVSDGTETD 724
            M PQLF+NYKLKSVAHLPW+  TYK  NT IDD+FAF+I MPT HRL+ FRDD+VFL+YLYQRW+Y VDK RVNEFG + E +K +    TD
Sbjct:  448 MLPQLFVNYKLKSVAHLPWKAFTYKAFNTFIDDVFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYPVDKRRVNEFGESYE-EKATRAPHTD 538          
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLP1L_MOUSE (Cleft lip and palate transmembrane protein 1-like protein OS=Mus musculus GN=Clptm1l PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.253e-30
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = -3
Query:  479 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGED 724
            M PQLF+NYK+KSVAHLPW+  TYK  NT IDD+FAF+I MPT HRL+ FRDD+VFL+YLYQRW+Y VDK+RVNEFG + E+
Sbjct:  449 MLPQLFVNYKMKSVAHLPWKAFTYKAFNTFIDDVFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYPVDKSRVNEFGESYEE 530          
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLP1L_CHICK (Cleft lip and palate transmembrane protein 1-like protein OS=Gallus gallus GN=CLPTM1L PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30
Identity = 57/82 (69.51%), Postives = 70/82 (85.37%), Query Frame = -3
Query:  479 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGED 724
            M PQLF+NYK+KSVAHLPW+  TYK  NT IDD+FAF+I MPT HRL+ FRDD+VFL+YLYQRW+Y VDK+RVNE+G + E+
Sbjct:  448 MLPQLFVNYKMKSVAHLPWKAFTYKAFNTFIDDIFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYPVDKSRVNEYGESYEE 529          
BLAST of CN186002 vs. ExPASy Swiss-Prot
Match: CLP1L_DANRE (Cleft lip and palate transmembrane protein 1-like protein OS=Danio rerio GN=clptm1l PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.249e-29
Identity = 55/82 (67.07%), Postives = 69/82 (84.15%), Query Frame = -3
Query:  479 MCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIYKVDKTRVNEFGFAGED 724
            M PQLF+NYKLKSVAHLPW+   YK  NT IDD+FAF+I MPT HRL+ FRDD+VFL+YLYQRW+Y VD++RVNE+G + ++
Sbjct:  448 MLPQLFVNYKLKSVAHLPWKAFMYKAFNTFIDDVFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYPVDRSRVNEYGVSYDE 529          
The following BLAST results are available for this feature:
BLAST of CN186002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CLPT1_MOUSE4.851e-3378.05Cleft lip and palate transmembrane protein 1 homol... [more]
CLPT1_HUMAN4.851e-3378.05Cleft lip and palate transmembrane protein 1 OS=Ho... [more]
CLPT1_BOVIN2.407e-3277.78Cleft lip and palate transmembrane protein 1 homol... [more]
CLPT1_DANRE4.540e-3174.39Cleft lip and palate transmembrane protein 1 homol... [more]
CLP1L_BOVIN7.744e-3171.95Cleft lip and palate transmembrane protein 1-like ... [more]
CLP1L_PONAB1.321e-3067.39Cleft lip and palate transmembrane protein 1-like ... [more]
CLP1L_HUMAN1.321e-3067.39Cleft lip and palate transmembrane protein 1-like ... [more]
CLP1L_MOUSE2.253e-3070.73Cleft lip and palate transmembrane protein 1-like ... [more]
CLP1L_CHICK3.843e-3069.51Cleft lip and palate transmembrane protein 1-like ... [more]
CLP1L_DANRE4.249e-2967.07Cleft lip and palate transmembrane protein 1-like ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186002 ID=CN186002; Name=CN186002; organism=Citrus sinensis; type=EST; length=726bp
TTTTTGAAAACCATTCCATAGCTCAAATTAAAATTGGGAAAAAAGAGTAT
ACCTGCCAAGCTGTCAGCTGAGCTATTCTATCAGCAGCCACCGCATCTGT
TGATGCTACCAAGCTGCTACAGAATCCTTGAAGGTGCTCCAACAACATTC
TATTATGCTGCCGATTCATACATTTCTTTCCACAAGGCAAAAAAGGGATA
GACAATAATTCTAATAGCAACACAAGGAAAAGACCTAAAATCAAATCCCT
CAGGAACAACATTATAATGTGATTATCTAAAACGAAATATGGAAAGAATA
ATTTTTATCCTAAACAAATTTTACACAAAATCTGTTGAAATATAATTAAC
TGAAACCTTGCTCAGTTAGTTTTCTTATCGAATCCTTCCCTTGAAGTTGC
ACCTTTCTATTTTCAATTGGTTTTCTTATCCTCCTTACTGATAAGTGCAT
CTGTCTCTGTACCATCAGAAACCTTATCATCCTCACCAGCAAAACCAAAT
TCATTTACACGTGTCTTGTCCACTTTATAAATCCATCTCTGGTATAGATA
TATCAAGAATACAAGATCATCACGAAACACGGAAAGCCGATGCAGTGTTG
GCATTTTAATGACAAAGGCAAAAAGATCATCAATTATGGTGTTCAGGAAC
TTGTATGTCATTTGCCTCCAGGGTAGATGCGCCACAGACTTAAGCTTATA
GTTAATAAACAGTTGCGGGCACATCA
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