CN185959

Overview
NameCN185959
Unique NameCN185959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185959 vs. ExPASy Swiss-Prot
Match: P2R3C_RAT (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Rattus norvegicus GN=Ppp2r3c PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.346e-15
Identity = 64/208 (30.77%), Postives = 100/208 (48.08%), Query Frame = 2
Query:  185 MLWGRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKRSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPS 775
            M W   LRR + S          E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++  I    G E M NYE+F  +     E+ GPKC++FF+   F K    D  GR++I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+
Sbjct:    1 MDWKDVLRRRLASPNSDPKRKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QIPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRVSIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPT 203          
BLAST of CN185959 vs. ExPASy Swiss-Prot
Match: P2R3C_MOUSE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Mus musculus GN=Ppp2r3c PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.758e-15
Identity = 65/208 (31.25%), Postives = 100/208 (48.08%), Query Frame = 2
Query:  185 MLWGRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKRSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPS 775
            M W   LRR + S          E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++  I    G E M NYE+F  +     E+ GPKC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+
Sbjct:    1 MDWKDVLRRRLASPNTDPKRKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QIPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPT 203          
BLAST of CN185959 vs. ExPASy Swiss-Prot
Match: P2R3C_BOVIN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Bos taurus GN=PPP2R3C PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.916e-15
Identity = 60/207 (28.99%), Postives = 99/207 (47.83%), Query Frame = 2
Query:  185 MLWGRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKRSXXXXXXXXXXXMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPS 775
            M W   LRR + + +    +   E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++           +NYE+F  +     E+ GPKC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+
Sbjct:    1 MDWKEILRRRLATPSTSPHKKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPT 203          
BLAST of CN185959 vs. ExPASy Swiss-Prot
Match: P2R3C_HUMAN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Homo sapiens GN=PPP2R3C PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.943e-14
Identity = 59/207 (28.50%), Postives = 98/207 (47.34%), Query Frame = 2
Query:  185 MLWGRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKRSXXXXXXXXXXXMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPS 775
            M W   LRR + +     ++   E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++           +NYE+F  +     E+ G KC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+
Sbjct:    1 MDWKEVLRRRLATPNTCPNKKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINYENFLKVG----EKAGAKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPT 203          
BLAST of CN185959 vs. ExPASy Swiss-Prot
Match: P2R3C_XENTR (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Xenopus tropicalis GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13
Identity = 62/203 (30.54%), Postives = 98/203 (48.28%), Query Frame = 2
Query:  185 MLWGRNLRRFIG-SGTGLGSEALMELETKRILLDIFREKQQ--KSAEAGTIPSFYKKKPEEGSI-SHRVQRLAKYRFLKKRSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPS 775
            M W R+L+  +   G    SE  M+ E   +  + + E +   K + A  IP FY + P E  +   +++  ++  FL+++S           +W  L ++       G E M NY +F  +     E+ G KC+ FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+
Sbjct:    1 MDWKRSLKEKLRRDGYVRKSEQEMKEEEMSLFTNYYTEWKGGGKVSSAQNIPRFYYRLPAEDEVLQQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QSPPLIGEEAMINYTNFQTVG----EKAGEKCKTFFTSKVFSKLIPNDPYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPT 198          
BLAST of CN185959 vs. ExPASy Swiss-Prot
Match: P2R3C_DANRE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Danio rerio GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.066e-12
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  326 IPSFYKKKPEEGSI-SHRVQRLAKYRFLKKRSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPS 775
            IP FY + P E  +   +++  ++  FL+++S           +W  L ++ V    TG E M +YE F  +     E+ G KC+ FF+   + K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+
Sbjct:   59 IPRFYYRLPAEDEVLMQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQV-PPTTGDEAMISYESFLKVG----EKAGTKCKLFFTARVYAKLLHNDPYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPT 206          
The following BLAST results are available for this feature:
BLAST of CN185959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
P2R3C_RAT1.346e-1530.77Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_MOUSE1.758e-1531.25Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_BOVIN3.916e-1528.99Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_HUMAN1.943e-1428.50Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_XENTR6.252e-1330.54Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_DANRE1.066e-1233.33Serine/threonine-protein phosphatase 2A regulatory... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002C06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185959 ID=CN185959; Name=CN185959; organism=Citrus sinensis; type=EST; length=776bp
GGTTAATTCATTTCTCAAATTCTGTAAATTTTATTTAACAAACTATATGG
GTGAAAAAGTTGAACTTGTTCGAGTTTACTGAAGAGTCGAATTAGTTACT
TGGATTCGGCCGGCCATGTACAGTGGGTCCAGTGATGGCGAGAGTCACGA
GGCCGCGCAGCGAAAGATCCCGCTGGCTTCGTCAATGCTTTGGGGGCGAA
ACTTGCGTCGCTTCATTGGATCCGGTACCGGCCTTGGATCCGAAGCCTTG
ATGGAGCTTGAGACAAAGAGAATTTTGCTTGATATATTTAGAGAGAAGCA
ACAGAAAAGTGCTGAAGCTGGCACAATTCCCAGCTTCTACAAGAAGAAAC
CTGAAGAAGGGTCCATTAGTCACAGGGTCCAGAGACTTGCAAAATATCGG
TTTTTAAAGAAGCGATCAGATCTTTTACTAAATGCTGATGATCTGGATGC
AATGTGGGTTTGCTTGAGAGAAAACTGTGTTATTGATGATGCCACTGGTG
CAGAAAAGATGAATTATGAAGATTTTTGCCACATTGCGTCAGTATGTACT
GAGCAAATAGGCCCTAAGTGTAGACGTTTCTTCAGCCCGTCAAATTTTAT
GAAGTTTGAGAAAGATGAGTCGGGGAGAATCGCCATTTTGCCGTTCTATC
TATATGTGATGCGTACGGTTTCACTTACACAAGCCAGAATTGATATGAGT
GAGCTTGATGAAGATTCTGATGGTTTCCTTCAACCTCATGAAATGGAGGC
TTATATACGTGGTCTGATTCCTAGTC
back to top