CN185908

Overview
NameCN185908
Unique NameCN185908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 2.709e-125
Identity = 223/255 (87.45%), Postives = 234/255 (91.76%), Query Frame = 3
Query:    6 ISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPA 770
            ISD+AQADNYEKIFS +KPNSI            QS+GLDFPKN  VIAVCPKGMGPSVRRLYVQGKEINGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVE ITG+ISK ISTQGMLAVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPA
Sbjct:  184 ISDSAQADNYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGMLAVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPA 438          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 441.425 bits (1134), Expect = 2.536e-123
Identity = 220/255 (86.27%), Postives = 230/255 (90.20%), Query Frame = 3
Query:    6 ISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPA 770
            ISDAAQADNYEKIFS MKPNSI            QS GLDFPKNI V+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ ISTQGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVR +RPA
Sbjct:  194 ISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISVVAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTISTQGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPA 448          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 435.647 bits (1119), Expect = 1.391e-121
Identity = 214/255 (83.92%), Postives = 232/255 (90.98%), Query Frame = 3
Query:    6 ISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPA 770
            ISD+AQADNYEK+FS MKPNSI            QS+G DFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPA
Sbjct:  200 ISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPA 454          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 432.18 bits (1110), Expect = 1.538e-120
Identity = 216/254 (85.04%), Postives = 229/254 (90.16%), Query Frame = 3
Query:    6 ISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 767
            ISDAAQADNYEKIFS MKPNSI            QS GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP
Sbjct:  182 ISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRP 435          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILV5_SCHPO (Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv5 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.447e-27
Identity = 82/259 (31.66%), Postives = 130/259 (50.19%), Query Frame = 3
Query:    6 ISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAG-----RRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 767
            +SDAAQ + + KI   +                     +  PK++ VI V PKG G +VR L+ +G+     GINSSFAV+QDV G+A   A+G +VA+GS F + TT ++E  SD+ GERG L+G ++G+  + ++   E G +   A+  TVE  T  +  +I   G+  ++ + S   ++              ++L E Y++V  G+E +  +        R  Y+KE      + +I    +WK GE VRS RP
Sbjct:  152 LSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTKIHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVAVGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKRSLEYNSAPNYRELYDKE------LEEIRNLEIWKAGEVVRSLRP 399          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILV5_YEAST (Ketol-acid reductoisomerase, mitochondrial OS=Saccharomyces cerevisiae GN=ILV5 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.207e-26
Identity = 78/254 (30.71%), Postives = 124/254 (48.82%), Query Frame = 3
Query:    6 ISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 767
            +SDAAQ++ +  I   +                     ++ PK++ VI V PKG G +VR L+ +G+     GINSS+AV  DV G+A   A   +VA+GS + + TT E+E  SD++GERG L+G +HG+  + +    ENG +   A+  TVE  T  +  +I   GM  +Y++ S   ++     Y         +  + YE    G+E +  +    +   +E L    +  I    +WKVG+ VR  RP
Sbjct:  145 LSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTHVEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALAVAIGSGYVYQTTFEREVNSDLYGERGCLMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQDLYESTKNGTETKRSLEFNSQPDYREKLEK-ELDTIRNMEIWKVGKEVRKLRP 392          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.100e-25
Identity = 76/257 (29.57%), Postives = 128/257 (49.81%), Query Frame = 3
Query:    6 ISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 767
            +SDAAQ++ +  I   +                     ++ P ++ VI V PKG G +VR L+ +G+     GINSSFAV+QDV G+A   A+   VA+GS + + TT E+E  SD++GERG L+G +HG+  + +    E G +   A+  TVE  T  +  +I   GM  ++++ S   ++   ++   +  +  P   +    Y+ V  G E +  +    +   +E   A  + +I    +W+ G+ VRS RP
Sbjct:  151 LSDAAQSETWPHIKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVILVAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGKAKEKAVALGVAVGSGYLYETTFEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKFKDALKP---VFNNLYDSVKNGDETKRSLEYNSQPDYRERYEA-ELDEIRNLEIWRAGKAVRSLRP 398          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_METHJ (Ketol-acid reductoisomerase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=ilvC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 62/222 (27.93%), Postives = 104/222 (46.85%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS-----GEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAF-PMGKIDQTRM-WKVGERVRSTRP 767
            P ++ VI V PKG G  VRR Y +GK     G+ +  A+HQDV G     AL ++  +G+     F T+  +E  +D+FGE+ +L G +  ++++ F    E G   ++AY   +   T +I  +I   G   + NS S     G+  +        SY    EIL    E++  G+  +  +L           P F  + + D+  +  +VG+ +R+T P
Sbjct:  119 PADVDVIMVAPKGPGHMVRRTYTEGK-----GVPALIAIHQDVSGNGKKTALAYAKGIGATRAVVFETSFREETETDLFGEQAVLCGGMTSLIKAGFETLVEAGYAPEMAYLEVLH-ETKLIVDLIYEGGFTKMRNSISNTAQFGDLTRGPRVIGQESYLAMQEIL----EEIQTGAFAKEWMLE-----NMVNRPVFNALTRADEEHLIEEVGKEIRATMP 325          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_BACP2 (Ketol-acid reductoisomerase OS=Bacillus pumilus (strain SAFR-032) GN=ilvC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.317e-14
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 476
            P ++ V  V PKG G  VRR Y QG     AG+ + FA++QDV G+A + AL ++ A+G        TT ++E  +D+FGE+ +L G +  +V++ F   TE G   +LAY    EC+
Sbjct:  119 PSDVDVYLVAPKGPGHLVRRTYEQG-----AGVPALFAIYQDVSGQAKDKALAYAKAIGGARAGVLETTFKEETETDLFGEQAVLCGGLTSLVKAGFETLTEAGYQPELAY---FECL 228          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRMU (Ketol-acid reductoisomerase OS=Streptococcus mutans GN=ilvC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.364e-14
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P+++ V  V PKG G  VRR Y +G      G+ S +AV+Q+  G A N+AL W+  +GS       TT ++E   D+FGE+ +L+G +  ++E+ F   TE G    LAY
Sbjct:  120 PEDVDVFMVAPKGPGHLVRRTYTEG-----FGVPSLYAVYQNPTGNAENIALDWAKGIGSARVGLLVTTFKEETEEDLFGEQAVLMGGLTHLIEAGFEVLTEAGYAPQLAY 225          
The following BLAST results are available for this feature:
BLAST of CN185908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
ILV5_PEA2.709e-12587.45Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ARATH2.536e-12386.27Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_SPIOL1.391e-12183.92Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_ORYSJ1.538e-12085.04Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_SCHPO4.447e-2731.66Probable ketol-acid reductoisomerase, mitochondria... [more]
ILV5_YEAST2.207e-2630.71Ketol-acid reductoisomerase, mitochondrial OS=Sacc... [more]
ILV5_NEUCR7.100e-2529.57Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
ILVC_METHJ3.306e-1427.93Ketol-acid reductoisomerase OS=Methanospirillum hu... [more]
ILVC_BACP24.317e-1438.14Ketol-acid reductoisomerase OS=Bacillus pumilus (s... [more]
ILVC_STRMU7.364e-1437.84Ketol-acid reductoisomerase OS=Streptococcus mutan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185908 ID=CN185908; Name=CN185908; organism=Citrus sinensis; type=EST; length=771bp
GCGGTATTTCTGATGCTGCTCAGGCGGATAATTATGAGAAGATATTCTCT
TGCATGAAACCAAACAGCATCCTTGGACTTTCCCATGGGTTCCTTCTTGG
GCATTTGCAGTCAATGGGACTTGATTTCCCAAAGAATATCGGTGTGATTG
CTGTGTGTCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAA
GGCAAAGAGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCA
GGATGTTGATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCC
TTGGTTCTCCTTTCACATTTGCCACCACATTAGAGCAGGAGTACAGGAGT
GACATCTTTGGGGAGCGTGGCATTCTACTTGGTGCTGTTCATGGAATTGT
GGAATCCTTGTTTAGAAGGTTCACTGAAAATGGAATGAATGAGGATCTGG
CTTACAAGAATACCGTGGAGTGCATAACAGGAATTATATCAAAGATCATC
TCAACTCAGGGTATGTTGGCTGTCTACAATTCCTTCTCTGGAGAAGACAA
AAAGGAATTCGAGAAAGCTTATAGTGCCTCATATTATCCGTGCATGGAAA
TCTTATATGAGTGCTATGAAGATGTGGCCGCTGGCAGTGAGATCCGCAGT
GTTGTCTTGGCTGGACGTCGGTTTTATGAAAAGGAAGGTCTACCAGCTTT
CCCTATGGGAAAAATTGATCAGACTCGCATGTGGAAAGTTGGTGAGCGAG
TCCGATCAACACGTCCAGCAG
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