CN185887

Overview
NameCN185887
Unique NameCN185887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2452 contig Csv1_Contig2452:148..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 56/149 (37.58%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  351 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPY 797
            A +RST  + YG +   ++  K      +F  Y     G +  DEID EFLGKD T VQ NYYT G G  E++  LGFD S+GFH Y   W P  I+W +DG +   A  N     P+ P  +  ++W+ + +D   W G Y G +  Y
Sbjct:   85 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTPGKIMMNLWNGTGVDD--WLGSYNGANPLY 226          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.123e-20
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G  ++S   +L+G FS  I+ P G+T+G+    YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+   L FD S+ +H Y I W    I + +D   +R  +  ++ G  FP N+PM LY+S+W+A        ++K  W       +AP+V  YK  H+
Sbjct:   66 GTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNE--HDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNW------ANAPFVASYKGFHI 228          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.916e-20
Identity = 55/147 (37.41%), Postives = 75/147 (51.02%), Query Frame = -2
Query:  351 WRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPY 791
            +RST  + YG +   ++  K      +F  Y     G +  DEID EFLGKD T VQ NYYT G G  E+I +LGFD S  FH Y   W P  I+W +DG +   A  N     P+ P  +  ++W+ + +D   W G Y G +  Y
Sbjct:   88 YRSTNNYGYGLYEVSMKPAKNTGIVSSFFTYTGPSHGTQ-WDEIDIEFLGKDTTKVQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDGVLKHTATTN----IPSTPGKIMMNLWNGTGVDS--WLGSYNGANPLY 227          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.576e-20
Identity = 61/171 (35.67%), Postives = 93/171 (54.39%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G  ++S   +L+G FS  I+ P G+T+G+    YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+   L FD S+ +H Y + W    I + +D   +R  +  ++ G  FP N+PM LY+S+W+A        ++K  W       +AP++  Y+  H+
Sbjct:   65 GTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNE--HDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNW------ANAPFIASYRGFHI 227          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: GUB_BACSU (Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.576e-20
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = -2
Query:  351 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPY 788
            RS   + YG +   ++  K      +F  Y    +G    DEID EFLGKD T VQ NYYT G GN E+I DLGFD +  +H Y   W P+ I+W +DG++   A        P  P  +  ++W+ + +D+  W G Y G +  Y
Sbjct:   93 RSVQTYGYGLYEVRMKPAKNTGIVSSFFTYTGPTDGTP-WDEIDIEFLGKDTTKVQFNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATNQ----IPTTPGKIMMNLWNGTGVDE--WLGSYNGVNPLY 231          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.282e-20
Identity = 68/188 (36.17%), Postives = 94/188 (50.00%), Query Frame = -2
Query:  288 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFP-NKPMFLYASVWDASH------IDKARWC-GPYVGCDAPY----VCLYKDIHVPVATAVECPCDS 800
            G+ ++S   +LYG     I+   GN++G     YL S     + DEIDFEFLG    D  IV TN YT G G+RE+   L FD +  FH Y I W P  I + IDGK +R  +  E  G  +P N+PM +Y S+W+A        + K  W  GP+V     Y     C++  ++    T+   P DS
Sbjct:   59 GSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQ--GLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWSQGPFVASFMNYNSENACVWSIVNGTTTTSPCSPGDS 244          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: GUB_BACAM (Beta-glucanase OS=Bacillus amyloliquefaciens GN=bglA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.119e-19
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = -2
Query:  351 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPY 788
            RS   + YG +   ++  K      +F  Y    EG    DEID EFLGKD T VQ NYYT G GN E+  DLGFD +  +H Y   W P+ I+W +DG++   A        P  P  +  ++W+ + +D   W G Y G +  Y
Sbjct:   90 RSVQTYGYGLYEVRMKPAKNTGIVSSFFTYTGPTEGTP-WDEIDIEFLGKDTTKVQFNYYTNGAGNHEKFADLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATTQ----IPAAPGKIMMNLWNGTGVDD--WLGSYNGVNPIY 228          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 60/171 (35.09%), Postives = 88/171 (51.46%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT GTG++E+   L FD +  FH Y I W P  + + IDG  +R  + +E  G P   ++PM LYAS+W+A H      ++K  W        AP+   Y++ +V
Sbjct:   61 GSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDW------SKAPFTAFYRNYNV 223          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            GA ++S   +L+G FS  ++   G+++G+    YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+   L FD ++G+H Y + W   LI   +D   +R  +  ++ G  FP N+PM +Y+S+WDA        ++K  W       +AP+   Y   HV
Sbjct:   64 GAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSS--NNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNW------ANAPFTASYTSFHV 226          
BLAST of CN185887 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 60/171 (35.09%), Postives = 86/171 (50.29%), Query Frame = -2
Query:  324 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 800
            G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT GTG++E+   L FD +  FH Y I W P  I + +DG  +R  +  E  G P    +PM LYAS+W+A H      ++K  W        AP+   Y++ +V
Sbjct:   61 GSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDW------SKAPFTAFYRNYNV 223          
The following BLAST results are available for this feature:
BLAST of CN185887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
GUB_PAEMA2.956e-2137.58Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
XTH4_ARATH1.123e-2037.43Xyloglucan endotransglucosylase/hydrolase protein ... [more]
GUB_PAEPO1.916e-2037.41Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
XTH_BRAOB5.576e-2035.67Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
GUB_BACSU5.576e-2036.30Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 S... [more]
XTH21_ARATH7.282e-2036.17Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_BACAM2.119e-1936.30Beta-glucanase OS=Bacillus amyloliquefaciens GN=bg... [more]
XTH20_ARATH2.767e-1935.09Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_SOLLC2.767e-1935.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH2.767e-1935.09Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185887 ID=CN185887; Name=CN185887; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTCGAATCACAGTTCCATCTTATTGCTTAGATATTTCAAGAAAGC
CGTCTAGAGCAAGCATACAGAAGAAGCCTGAGACAGTGACATCCCTAAAC
AAGAAAGCAAATCAGATTACACCATTCAAAAATTTATTACAACAGACTGA
AATTGCTAAGATACAATTGGTAGGAACAGCAACCAACCACCACACAGTGA
AATCCGATTGATGAAAAGACATTGTAAATGGAAGAACAAAATCCCAAGAA
ACATCAGAACAACTCAAATACGCCACTCACCAAATCAAGAATCACAAGGG
CACTCCACCGCAGTGGCAACAGGCACATGAATGTCTTTGTAGAGGCAAAC
ATAAGGTGCATCACAGCCCACGTAGGGCCCACACCACCTGGCCTTATCAA
TGTGGCTAGCATCCCAAACTGAAGCATACAAAAACATTGGTTTATTGGGA
AACCCCTCACCCTCGTTCCTCTCAGCTCTCCTCACCACCTTCCCATCAAT
CAACCACTGGATCAAATCTGGACCCCACTTGATCACGTACTCATGAAATC
CTTCAGAACAATCGAACCCCAGATCATGAATCTCCTCTCTATTCCCGGTT
CCTGTAGTGTAATAATTGGTTTGAACGATAGTCTTGTCCTTGCCAAGGAA
TTCAAAGTCGATTTCGTCTTGGGATTTGTCGCCTTCTAGAGAAGAAAGGT
AGATGTTGAAGTTGAGGCCACTAGTGTTGCCTTTGGGGCACTGGATCAGG
GAGCTGAAGGTGCCGTAAAGGAAGCGAGTGGTGGAGCGCCACCTGGCTCC
G
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