CN185879

Overview
NameCN185879
Unique NameCN185879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 8.339e-76
Identity = 142/202 (70.30%), Postives = 158/202 (78.22%), Query Frame = -3
Query:  216 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQ--------------------------PERTTGVAFRGRSYRLSD 743
            FSINFGIRLLMIARYGV LEKGPFERRTADFLWMMIFG+ +LLVLS IP F + FLG+SLVFML+Y+WSREFPN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PD LGIIAGHLYYFLTVLHPLATGKN LKTPKWV K+VARWRIGAP  +  Q                          P  ++  AFRGRSYRL+D
Sbjct:   65 FSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWTPFLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGGGAYSSARAPPESSNTAFRGRSYRLTD 266          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.900e-68
Identity = 128/177 (72.32%), Postives = 145/177 (81.92%), Query Frame = -3
Query:  219 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQP--ERTTGVAFRGRSYRLS 743
            FSINFGIRLLMIARYGV LEKG FE+RTADFLWMMIFGA+SLL LSAIP    YFLG+ +V ML+YVWSRE+PNSQI++YGLV L++FYLPWAML LDVIFGS ++P  LGI+ GH YYFL+VLHPLATGKN LKTP WV K+VAR+RIG  A    +P    T   AFRGRSYRLS
Sbjct:   65 FSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGHTYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAANTGSGAFRGRSYRLS 241          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.176e-67
Identity = 130/179 (72.63%), Postives = 145/179 (81.01%), Query Frame = -3
Query:  219 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIG----APAINRAQPERTTGVAFRGRSYRLS 743
            FSINFGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP   +Y LG+ +V MLVYVWSRE PN+QINIYG++ LKAFYLPW ML LDVIFGSPL+P  LGI+ GHLYY+  VLHPLATGKN LKTPKWV K+VAR+RIG    AP    A     TG AFRGRSYRL+
Sbjct:   65 FSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSVIPQLNTYVLGLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGHLYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGTG-AFRGRSYRLN 242          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 9.241e-67
Identity = 128/179 (71.51%), Postives = 148/179 (82.68%), Query Frame = -3
Query:  219 FSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQPERT----TGVAFRGRSYRLS 743
            FS+ FGIRLLMIARYGV LEKG F++RTADFLWMMIFGA+SLLVLS IP+F S+FLGI +V ML+YVWSRE PN+QINIYGLV L++FYLPWAML LDVIFGS L+P  LGI+ GHLYYF  VLHPLATGK+ LKTPKWV K+VAR+RIG  A +  +P       +GV FRGRSYRL+
Sbjct:   65 FSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSIIPLFNSFFLGIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGHLYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGV-FRGRSYRLN 242          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.640e-26
Identity = 59/147 (40.14%), Postives = 87/147 (59.18%), Query Frame = -3
Query:  312 INFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIF-----RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 737
            +NF   +  + R+   LE+  F  R+AD+L+M IFG+  LL++ A   +     +  FL  S+ FM++YVWSR  PN  I+  GL T  A YLPW +L +  +F   L  D LG +AGH YYFL   +PL + + LLKTP +++ L+
Sbjct:   68 MNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLLGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLM 214          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.763e-25
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  309 INFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 737
            ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R  FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    D LG+IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct:   68 LDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.763e-25
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  309 INFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 737
            ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R  FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    D LG+IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct:   68 LDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.763e-25
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  309 INFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 737
            ++F   +  +ARY   LE+  F  RTADF +M++FGA  L    L+   IP       R  FL  SL FM+VYVWS+  P   ++  GL T  A YLPW +L   ++ GS    D LG+IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct:   68 LDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.303e-25
Identity = 59/142 (41.55%), Postives = 89/142 (62.68%), Query Frame = -3
Query:  324 TFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLAT-GKNLLKTPKWV 746
            +F  +F   ++   RY + LE+G F  R ADF++M +FGA+ L++LS I + +  FLG +   MLVY+WSR  P  Q+N +G++T  A YLPW +L   ++ G+  V D +GI  GH+Y+FL  + P    GK  LKTP+W+
Sbjct:   64 SFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAV-LMILSGIFV-QILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFPFQEHGKRFLKTPQWL 203          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 58/142 (40.85%), Postives = 92/142 (64.79%), Query Frame = -3
Query:  312 NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 734
            +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L+ MLVYVWSR  P  ++N +GL+T +A +LPWA++   ++ G+ ++ D LGI  GH+YYFL  + P    GK LL+TP +++ L+
Sbjct:   70 SFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRLLQTPGFLKLLL 209          
The following BLAST results are available for this feature:
BLAST of CN185879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DERL1_ARATH8.339e-7670.30Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DERL1_ORYSJ4.900e-6872.32Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER12_MAIZE3.176e-6772.63Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DER11_MAIZE9.241e-6771.51Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DERL2_DICDI4.640e-2640.14Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL2_ORYSJ1.763e-2542.11Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P... [more]
DER22_MAIZE1.763e-2542.11Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1[more]
DER21_MAIZE1.763e-2542.11Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2[more]
DERL2_CAEEL2.303e-2541.55Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]
DERL3_HUMAN3.007e-2540.85Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185879 ID=CN185879; Name=CN185879; organism=Citrus sinensis; type=EST; length=748bp
TTTTTTTTTTTTTTTTGCATCGCAATCTTGATGTTAAAAGTTTTTCCTTT
TACGCTCTACAAATCAATTTTTTGGTGAAGCAATAGTCCCTAACAATCTG
TAAAATGTGAAAATGAAACTTCTTGAACTGTCAGCTCTTCTGGGTTGAAG
GCTTTGCTGCCTTTGTCAGGTGCATCACCTGGAAAAATTACAAGAACGTT
GCCATATTATAATCAATCGCTTAAACGATATGATCTTCCTCTGAAAGCCA
CACCAGTTGTCCTTTCAGGCTGGGCACGATTGATAGCTGGAGCTCCGATT
CTCCACCTCGCCACCAGTTTTTGTACCCATTTTGGAGTCTTCAACAAGTT
CTTTCCAGTTGCAAGTGGATGTAAGACAGTCAAAAAGTAATACAGATGTC
CTGCTATGATTCCCAGCGGGTCTGGTACAAGGGGTGAACCAAAAATGACG
TCCAAAGCAAGCATAGCCCATGGTAGATAAAATGCCTTAAGTGTCACGAG
GCCATATATATTGATCTGAGAATTTGGGAATTCTCTACTCCAGACATAGA
CAAGCATAAAAACAAGTGATATCCCTAGGAAATAAGATCGAAATATGGGG
ATGGCTGACAACACCAACAGAGATAAGGCTCCAAAAATCATCATCCATAA
AAAATCTGCTGTACGCCTTTCAAATGGTCCCTTCTCCAGGTTAACTCCAT
ATCTCGCTATCATCAAAAGGCGAATCCCAAAATTGATTGAAAAAGTTC
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