CN185838

Overview
NameCN185838
Unique NameCN185838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:34..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.693e-65
Identity = 122/133 (91.73%), Postives = 131/133 (98.50%), Query Frame = 3
Query:   63 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IFVFKFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA DA +K
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKKK 133          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.251e-62
Identity = 116/133 (87.22%), Postives = 128/133 (96.24%), Query Frame = 3
Query:   63 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IF FKFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA D  +K
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDTKKK 133          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.785e-43
Identity = 87/133 (65.41%), Postives = 105/133 (78.95%), Query Frame = 3
Query:   63 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V  P+ +FVF F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG KK+K   AA+K
Sbjct:    1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 132          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.322e-42
Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K       +K
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKK 131          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 9.322e-42
Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K       +K
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKK 131          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.217e-41
Identity = 89/129 (68.99%), Postives = 102/129 (79.07%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQKK 464
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG    KA+  A KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT--AKANVGAGKK 130          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.217e-41
Identity = 89/129 (68.99%), Postives = 102/129 (79.07%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQKK 464
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG    KA+  A KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT--AKANVGAGKK 130          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.217e-41
Identity = 89/129 (68.99%), Postives = 102/129 (79.07%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQKK 464
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG    KA+  A KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT--AKANVGAGKK 130          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.217e-41
Identity = 89/129 (68.99%), Postives = 102/129 (79.07%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQKK 464
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG    KA+  A KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT--AKANVGAGKK 130          
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.077e-41
Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL ++GL  K + SRKQ KERKNR KK+RG  K       +K
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKK 131          
The following BLAST results are available for this feature:
BLAST of CN185838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS241_ARATH2.693e-6591.7340S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH1.251e-6287.2240S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_SPOFR3.785e-4365.4140S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_PONAB9.322e-4267.1940S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_BOVIN9.322e-4267.1940S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_RAT1.217e-4168.9940S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_MOUSE1.217e-4168.9940S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU1.217e-4168.9940S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN1.217e-4168.9940S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_XENLA2.077e-4166.4140S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185838 ID=CN185838|Name=CN185838|organism=Citrus sinensis|type=EST|length=542bp
ATTGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCCTCAGACTTTT
AACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTAGGAAGTT
CATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGATGTTCTTC
ATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAAGTTGGCA
AGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTAAGTTCCG
AACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATCTATGATT
CAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTATCAGGAAT
GGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGGAAAGGAA
GAACAGGGCTAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCCTCAGATG
CTGCCCAGAAGAAGTGAGCAATTGGAGATTCTTCTGTAGTCTCGAAGCCA
ATTTTCTGTGATGGAGTTTCTATAATAGTCTTTTTTTTTTTT
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