CN185807

Overview
NameCN185807
Unique NameCN185807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185807_ssr380 microsatellite CN185807_ssr380:380..391. BLAST: Citrus ESTs to Prunus persica proteins V1
CN185807_ssr260 microsatellite CN185807_ssr260:260..274. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN185807 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.469e-44
Identity = 85/131 (64.89%), Postives = 106/131 (80.92%), Query Frame = -3
Query:  398 KSKFVFSGPSKFAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQ 790
            +SK V +GPSK A+T+FKYIAPEQVPV+YGGLS++      T + +TE +VKPA+ YT+E+P +E   L WELRVLG DVSYGA+F P+ EGSY VIVSKTRK+  TDEPVI D+FK+GEPGK+V+TIDNQ
Sbjct:  432 RSKMVLAGPSKSADTIFKYIAPEQVPVKYGGLSKDTP---LTEETITEAIVKPAANYTIELPASEACTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRKIGSTDEPVITDSFKVGEPGKIVITIDNQ 559          
BLAST of CN185807 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.730e-43
Identity = 90/131 (68.70%), Postives = 102/131 (77.86%), Query Frame = -3
Query:  398 KSKFVFSGPSKFAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQ 790
            +SK V SGPSK AET+FKY+APE VPV+YGGLS++    FT  D VTE VVK  SKYT+++P TE S L WELRVLG DVSYGA+F PS E SYTVIVSK RKV  TDEPVI D+FK  E GKVV+TIDNQ
Sbjct:  540 RSKMVLSGPSKSAETIFKYVAPEVVPVKYGGLSKDSP--FTVEDGVTEAVVKSTSKYTIDLPATEGSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKNRKVGLTDEPVITDSFKASEAGKVVITIDNQ 668          
BLAST of CN185807 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 9.087e-39
Identity = 77/133 (57.89%), Postives = 101/133 (75.94%), Query Frame = -3
Query:  401 KSKFVFSGPSKFAETLFKYIAPEQVPVQYGGLSREG---EQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 790
            KSK VF+GPS+ AETLFKYI+PEQVPVQYGGLS +      +F+  D  +E+ VKP +K TVEI + E+  LVWE+RV GW+VSY AEFVP  + +YTV++ K RK+ P+DEPV+  +FK+ E GKV+LT+DN
Sbjct:  341 KSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLEDSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRPSDEPVLTHSFKVNELGKVLLTVDN 473          
BLAST of CN185807 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.818e-37
Identity = 75/133 (56.39%), Postives = 98/133 (73.68%), Query Frame = -3
Query:  401 KSKFVFSGPSKFAETLFKYIAPEQVPVQYGGLSREG---EQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 790
            KSK VF+GPS+ AETL KYI+PE VPVQYGGLS +      +FT  D  TE+ VKP +K TVEI V E+  +VWE+RV+GW+VSYGAEFVP  +  YTVI+ K RK+   +E V+  +FK+GE G+++LT+DN
Sbjct:  516 KSKLVFAGPSRSAETLLKYISPEHVPVQYGGLSVDNCECNSDFTHDDIATEITVKPTTKQTVEIIVYEKCTIVWEIRVVGWEVSYGAEFVPENKEGYTVIIQKPRKMTAKNELVVSHSFKVGEVGRILLTVDN 648          
BLAST of CN185807 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.007e-29
Identity = 67/131 (51.15%), Postives = 91/131 (69.47%), Query Frame = -3
Query:  401 KSKFVFSGPSKFAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTE-RSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 790
            KSKFV + P+K  ETL KYI  +++PVQYGG     + EF+  + V+EVVVKP S  T+EIP  E    LVW++ VLGW+V+Y  EFVP+ EG+YTVIV K +K+   + P I ++FK  + GK+VLT+DN
Sbjct:  392 KSKFVVARPAKVRETLLKYIPADELPVQYGGFKTVDDTEFSN-ETVSEVVVKPGSSETIEIPAPETEGTLVWDIAVLGWEVNYKEEFVPTEEGAYTVIVQKVKKMGANEGP-IRNSFKNSQAGKIVLTVDN 520          
BLAST of CN185807 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.755e-26
Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  401 KSKFVFSGPSKFAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTE-RSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 790
            KSKFV S     AETL+K+I PE +PVQYGGLSR  + +     P +E  +K   K  ++I   E  + + W++ V GWD+ Y AEFVP+AE SY ++V K +K+  TDE  +C++F   E GK++L++DN
Sbjct:  258 KSKFVMSKEGNAAETLYKFIRPEDIPVQYGGLSRPTDSQNGPPKPASEFSIKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDE-AVCNSFTTVEAGKLILSVDN 387          
The following BLAST results are available for this feature:
BLAST of CN185807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL1_ARATH2.469e-4464.89Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
PATL2_ARATH2.730e-4368.70Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL3_ARATH9.087e-3957.89Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL5_ARATH3.818e-3756.39Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL4_ARATH1.007e-2951.15Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
PATL6_ARATH6.755e-2644.27Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185807 ID=CN185807; Name=CN185807; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTAATAAAGAACACATATACATAACAATAATCCTT
CATCAAATTTACACAAATTTTACAGGCAGAGTATATCAAGATTCAAGAAT
AACAACAAAGTTTCTGTCCAGATTCCACGCCGTGTCCGGTCTCCACCCAT
AGCATCCAACAAAACCAAACCACCAAAAATCCCCAAAAACTAATACAAAA
AAAATAATATAAATGAAATCCCCCAAAGTTTAAATTTTTTTATAAAATTA
AATTCCAACAAATAAAATAAAATAACCTCTATCATAGAAATAAAAGAACC
CTTTTCTTATTGTGCAATGCAATGGCCTTCATAGATTGATTTAATCAGAG
GAGGGCTTGGTCTTGGACCTATATAGGAGCTTCTTCTTCTTCGAGGACTG
GTTATCAATGGTGAGAACCACCTTGCCGGGTTCGCCAATTTTGAATGTGT
CGCAGATGACCGGTTCATCAGTTGGCGCGACCTTCCTAGTCTTTGACACT
ATTACAGTGTAGCTGCCTTCGGCACTAGGCACAAATTCAGCTCCGTAGCT
CACATCCCAACCCAAAACTCGGAGTTCCCACACAAGAATACTTCTCTCAG
TAACGGGGATTTCAACAGTGTATTTGCTAGCTGGCTTGACGACAACCTCA
GTAACAGGGTCAGTTGTTGTAAATTCCTGCTCACCCTCCCTGCTCAATCC
ACCATACTGAACTGGTACTTGCTCAGGAGCTATGTATTTGAAAAGGGTTT
CTGCAAATTTAGACGGTCCTGAAAATACAAACTTGCTCTTTTGTCCTT
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