CN185732

Overview
NameCN185732
Unique NameCN185732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185732 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = -1
Query:  357 DFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHISPPEDLKRFGEIL 704
            DF  GD + D  N       W + H+  K   DAK + AALK +G S +   G+CWGG ++ ++  + D++A  + HP ++T DD+ E+K P+ ILGA+ D  +PP+++ RF  +L
Sbjct:  103 DFLKGDYLDDKKN----FTEWLEAHSPVKAAEDAKPLFAALKKEGKS-VAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVL 213          
BLAST of CN185732 vs. ExPASy Swiss-Prot
Match: CMBL_XENLA (Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 54/172 (31.40%), Postives = 81/172 (47.09%), Query Frame = -1
Query:  207 DFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHISPPEDLKRFGEILSAKLKNDCLVKIYPRVSHGWTVR----YNVEDEFAVKSAEEAHEDMINWLTKYV 704
            DFF G      +N       W +     K   +   V+  LK +  V  IG  GFCWGGVV   L   + +++A V  +     V+D   +  P   + AEIDH+ P E +    + L    K D  +K++P+ +HG+  R     N ED+  +   EEA +DM+ WL KY+
Sbjct:   77 DFFVGQESWKPSNDWSTFTEWLQTRQATKVEKEMNVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQVSLLEQKLKVHSKVDFQIKVFPKQTHGFVHRKKEDINPEDKPFI---EEARKDMLEWLQKYI 245          
BLAST of CN185732 vs. ExPASy Swiss-Prot
Match: CMBL_XENTR (Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = -1
Query:  207 DFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHISPPEDLKRFGEILSAKLKNDCLVKIYPRVSHGWTVRYNVEDEFAVKS-AEEAHEDMINWLTKYV 704
            DFF G      +N +     W +     K   +   V+  LK +  V  IG  GFCWGGVV   L   + +++A V  +     V+D   +  P   + AE+DH+ P E +    E L    K D  VK++P+ +HG+  R N +     K   EEA ++M+ WL KY+
Sbjct:   77 DFFVGQEPWKPSNDRSTFTEWLQTRQATKVEKEINVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQVSLLEEKLKVHSKVDFQVKVFPKQTHGFVHRKNEDINPEDKPFIEEARKNMLEWLHKYI 245          
BLAST of CN185732 vs. ExPASy Swiss-Prot
Match: CMBL_MOUSE (Carboxymethylenebutenolidase homolog OS=Mus musculus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 55/173 (31.79%), Postives = 82/173 (47.40%), Query Frame = -1
Query:  207 DFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHISPPEDLKRFGEILSAKLKNDCL----VKIYPRVSHGWTVRYNVEDEFAVKS-AEEAHEDMINWLTKYV 704
            DFF G    D         AW K  N  K   +  +V+  L+ +     IG  GFCWGGVV  ++ +++ DI+A V ++      +D+  +K P   + AE D + P E +      L+ KLK  C+    VK +   +HG+  R   +   A K   EEA  ++I WL KYV
Sbjct:   77 DFFVGQEPWDPAGDWSTFPAWLKSRNARKVNREVDAVLRYLRQQCHAQKIGIVGFCWGGVVVHQVMTAYPDIRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDTVIPLEQV----STLTQKLKEHCIVNYQVKTFSGQTHGFVHRKREDCSPADKPYIEEARRNLIEWLNKYV 245          
BLAST of CN185732 vs. ExPASy Swiss-Prot
Match: CMBL_RAT (Carboxymethylenebutenolidase homolog OS=Rattus norvegicus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 52/173 (30.06%), Postives = 80/173 (46.24%), Query Frame = -1
Query:  207 DFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHISPPEDLKRFGEILSAKLKNDCL----VKIYPRVSHGWTVRYNVEDEFAVKS-AEEAHEDMINWLTKYV 704
            DFF G    D          W K  N  K   +  +V+  LK +     IG  GFCWGG+V   + +++ +++A V ++      +D+  +K P   + AE D + P E +     IL  KLK  C+    VK +   +HG+  R   +   A K   EEA  ++I WL KY+
Sbjct:   77 DFFVGQEPWDPAGDWSTFPEWLKSRNARKINREVDAVLRYLKQQCHAQKIGIVGFCWGGIVVHHVMTTYPEVRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDAVIPLEQV----SILIQKLKEHCIVNYQVKTFSGQTHGFVHRKREDCSPADKPYIEEARRNLIEWLNKYI 245          
The following BLAST results are available for this feature:
BLAST of CN185732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
E134_MAIZE7.953e-1737.07Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
CMBL_XENLA2.829e-1431.40Carboxymethylenebutenolidase homolog OS=Xenopus la... [more]
CMBL_XENTR4.825e-1431.36Carboxymethylenebutenolidase homolog OS=Xenopus tr... [more]
CMBL_MOUSE3.458e-1231.79Carboxymethylenebutenolidase homolog OS=Mus muscul... [more]
CMBL_RAT4.993e-1130.06Carboxymethylenebutenolidase homolog OS=Rattus nor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185732 ID=CN185732; Name=CN185732; organism=Citrus sinensis; type=EST; length=704bp
AGGATAAGATCTATATAAATATTGCTCTGTGATATTACAAGCTACTTATG
ATGTAAAGCTTTGAAAGCTTGAAATACATAGCAGGTTCTAGCCACTGAAG
CAAATGATGCTAATAACATCATGAAATTATGGAGGATGATAAGCCATTAT
TGTGGTCTCATTTCTTACAAGTGCAATACCCAACCGAAAGTTTATTCGTC
TCTCTTGACATACTTGGTTAACCAATTTATCATGTCTTCATGTGCCTCTT
CTGCACTCTTGACGGCAAATTCATCTTCAACATTGTACCTCACCGTCCAT
CCATGAGATACACGAGGGTATATTTTCACAAGGCAGTCATTCTTCAGTTT
TGCAGATAATATTTCTCCAAAACGCTTCAGATCTTCTGGTGGGGAAATGT
GATCAATCTCAGCTCCCAAAATAGCAACTGGAACTTTAATCTCATTTATA
TCATCGACTGTGATGGCACCAGGATGCAACACAACTGCAGCCTGAATATC
ATGAGAACTTGCCAATTTTGCAGCTACAACGCCTCCCCAGCAAAAACCTG
CTGCCCCTATGGCAGATACACCTTTACTTTTCAAAGCAGCAATAACTGAT
TTGGCATCTACATAACCTTTGTCCGTATTATGAATTTTTCTCCATGCCTC
TCGATCAAACTGAGGGTTGTTCAGATCAACAATAGGGTCGCCATAAAAGA
AATC
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