DC888009

Overview
NameDC888009
Unique NameDC888009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5629 contig Csv1_Contig5629:1..462. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_PEA (Pyrroline-5-carboxylate reductase OS=Pisum sativum GN=PROC PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.078e-41
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGAASM T SGKHPGQLKDDV SPGGTTIAG+HELEK GFRG LMNAVVAAAKRSRELS
Sbjct:  180 SGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGAASMATLSGKHPGQLKDDVTSPGGTTIAGVHELEKGGFRGTLMNAVVAAAKRSRELS 273          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_ACTCH (Pyrroline-5-carboxylate reductase OS=Actinidia chinensis PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.403e-40
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMV + GKHPGQLKDDVAS GGTTIAGIHELEK GFRG LMNAVV+A KRS+E+
Sbjct:  183 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVARGGKHPGQLKDDVASAGGTTIAGIHELEKGGFRGTLMNAVVSATKRSQEI 275          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_SOYBN (Pyrroline-5-carboxylate reductase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 7.581e-40
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGAASMV+++GKHPGQLKDDV SPGGTTI GIHELE  GFRG LMNAVVAAAKRSRELS
Sbjct:  181 SGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVSQTGKHPGQLKDDVTSPGGTTITGIHELENGGFRGTLMNAVVAAAKRSRELS 274          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR1_ARATH (Pyrroline-5-carboxylate reductase OS=Arabidopsis thaliana GN=PROC1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 7.581e-40
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGAA+MV+K+GKHPG LKDDV SPGGTTIAG+HELEK  FR  LMNAVVAAAKRSRELS
Sbjct:  181 SGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSKTGKHPGVLKDDVTSPGGTTIAGVHELEKGSFRATLMNAVVAAAKRSRELS 274          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR2_BOVIN (Pyrroline-5-carboxylate reductase 2 OS=Bos taurus GN=PYCR2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.231e-26
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F+A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V SPGG TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:  176 SGPAYAFMALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTREL 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR1_PONAB (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Pongo abelii GN=PYCR1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.137e-26
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPGG TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:  176 SGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTREL 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR1_HUMAN (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Homo sapiens GN=PYCR1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 8.137e-26
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V+SPGG TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:  176 SGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTREL 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_METAC (Pyrroline-5-carboxylate reductase OS=Methanosarcina acetivorans GN=proC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.063e-25
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPA+IF  IEA+ADG V  G+ R+ AL LA+QTVLGAA M  ++G HPG+LKD V SP GTTI GIH LE++G R   MNAV+ A++RS+EL
Sbjct:  175 SGPAFIFPVIEAMADGAVLEGMDRKSALTLAAQTVLGAAKMALETGMHPGELKDMVTSPAGTTIQGIHSLEEAGIRAAFMNAVIRASERSKEL 267          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_SYNY3 (Pyrroline-5-carboxylate reductase OS=Synechocystis sp. (strain PCC 6803) GN=proC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.813e-25
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY+ L IEALADGGV AGLPR +A  LA QTVLG A ++ ++ +HP Q+KD V SPGGTTIAG+  LEK GFR  ++ AV AA +RS+EL
Sbjct:  172 SGPAYVALMIEALADGGVLAGLPRAIAQKLALQTVLGTAELIKETEEHPAQIKDKVTSPGGTTIAGVAVLEKMGFRSAIIEAVRAAYRRSQEL 264          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR2_RAT (Pyrroline-5-carboxylate reductase 2 OS=Rattus norvegicus GN=Pycr2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.368e-25
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F+A++ALADGGV  G+PR LA+ L +Q +LGAA M+  S  HPGQLKD+V SPGG TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:  176 SGPAYAFMALDALADGGVKMGVPRRLAVRLGAQALLGAAKMLLDSEDHPGQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTREL 268          
The following BLAST results are available for this feature:
BLAST of DC888009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
P5CR_PEA3.078e-4190.43Pyrroline-5-carboxylate reductase OS=Pisum sativum... [more]
P5CR_ACTCH3.403e-4089.25Pyrroline-5-carboxylate reductase OS=Actinidia chi... [more]
P5CR_SOYBN7.581e-4086.17Pyrroline-5-carboxylate reductase OS=Glycine max P... [more]
P5CR1_ARATH7.581e-4088.30Pyrroline-5-carboxylate reductase OS=Arabidopsis t... [more]
P5CR2_BOVIN6.231e-2661.29Pyrroline-5-carboxylate reductase 2 OS=Bos taurus ... [more]
P5CR1_PONAB8.137e-2661.29Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR1_HUMAN8.137e-2661.29Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR_METAC1.063e-2561.29Pyrroline-5-carboxylate reductase OS=Methanosarcin... [more]
P5CR_SYNY31.813e-2562.37Pyrroline-5-carboxylate reductase OS=Synechocystis... [more]
P5CR2_RAT2.368e-2560.22Pyrroline-5-carboxylate reductase 2 OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionDC888009 EIC Citrus sinensis cDNA clone EIC1248 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC888009 ID=DC888009; Name=DC888009; organism=Citrus sinensis; type=EST; length=461bp
TATTANTTCNCTATTCATCAACGCCTGGAAGTACATTATTAGCATATAAG
CAACTTACCAATGCAGCTTCAAGCAACTGTTTACATCAATATAAATACAG
AAAACAAAAAAAAAAAGTTAAATCGCCATACTAGATGTATAAGAGCTGAG
AAACTGGAATCAAAATGAATTAGCTCTAGGACAGTTCTCGGCTTCGCTTA
GCAGCAGCAACAACAGCATTCATTAATATCCCGCGAAATCCACTTTTCTC
CAACTCATGAATACCGGCAATAGTAGTCCCACCAGGCGATGCAACATCAT
CTTTTAGCTGTCCAGGATGCTTCCCACTTTTAGTGACCATTGATGCTGCT
CCTAATACTGTCTGAGAAGCTAGACCAAGTGCAAGTTCTCGCGGTAGCCC
TGCAGCTACACCTCCATCAGCCAAAGCTTCAATTGCTAAAAATATATATG
CTGGACCGCTG
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