CN185662

Overview
NameCN185662
Unique NameCN185662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1708 contig Csv1_Contig1708:343..1155. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185662 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 2.140e-75
Identity = 140/175 (80.00%), Postives = 154/175 (88.00%), Query Frame = -2
Query:  288 KSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAFIQHEWRPKSLFTISGEVDTRAIEKS 812
            K+IFSF+VPDQ+SGKVELQY HEYAGI+T IG TA+P+           VALGTDLSFDTATGNFTKCNAGLS++  DLIASL LNDKGDT++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH LDPLT+VKARVN+YG+ASA IQHEWRPKSLFTISGEVDTRAIEKS
Sbjct:   91 KTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKS 265          
BLAST of CN185662 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 2.534e-68
Identity = 121/174 (69.54%), Postives = 147/174 (84.48%), Query Frame = -2
Query:  291 KSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAFIQHEWRPKSLFTISGEVDTRAIEK 812
            K+I SF VPDQRSGK+E+QY H+YAGI T +G TANPI           +ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+KGD L ASYYH VSPLT+TAVGAE+ HSFS+NEN +T+GTQH LDPLTSVKAR+NN+G+ASA +QHEWRPKSLFT+SGEVDT++++K
Sbjct:   91 KTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDK 264          
BLAST of CN185662 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 2.007e-65
Identity = 123/175 (70.29%), Postives = 144/175 (82.29%), Query Frame = -2
Query:  288 KSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAFIQHEWRPKSLFTISGEVDTRAIEKS 812
            +SIFSF VPDQ SGKVELQY HEYAGIST +G T NP            +A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD LNASYYHIV+PL NTAVGAE++H  SS ++T+T+GTQH+LDPLTSVKARVN+ G ASA IQHEW+PKS FTISGEVDT++I+KS
Sbjct:   91 RSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKS 265          
BLAST of CN185662 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 2.297e-61
Identity = 119/175 (68.00%), Postives = 140/175 (80.00%), Query Frame = -2
Query:  288 KSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAFIQHEWRPKSLFTISGEVDTRAIEKS 812
            KSI SF VPDQRSGK ELQY H+YAG+S  IG TA+P+           +A+G D+S DTATGN TK NAGLS+++ DLIASL LN+KGD+L ASYYHIV+  + TAVGAELTHSFSSNEN+LT GTQH LDPLT VKAR NN G+ASA +QHEWRPKS++TIS EVDT+AI+KS
Sbjct:   90 KSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKS 263          
BLAST of CN185662 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.317e-60
Identity = 120/175 (68.57%), Postives = 137/175 (78.29%), Query Frame = -2
Query:  288 KSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAFIQHEWRPKSLFTISGEVDTRAIEKS 812
            K+I SF VPDQ+SGKVELQY H+YAGI+  IG TANP+           +A+G D+S DTAT NF K NA LSYT+ DLIASL LN+KGD+L ASYYHIV   + TAVGAELTHSFSSNEN+LT GTQH LDPLT VKAR+NN G+ASA IQHE+ PKSL TIS EVDT+AIEKS
Sbjct:   91 KTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKS 264          
BLAST of CN185662 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 6.255e-59
Identity = 111/175 (63.43%), Postives = 133/175 (76.00%), Query Frame = -2
Query:  288 KSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAFIQHEWRPKSLFTISGEVDTRAIEKS 812
            K+I SF VP+Q SGKVELQY HEYAGIS+ +G  ANPI           +A G D+SFDT  G  TK NA +++   DLI SLTLN+KGD L+ASYYH ++PL+NTAVG +++H FS+ ENT T+GTQHALDPLT+VK RV N G+ASA IQHEWRPKSL TIS EVDT+AIEKS
Sbjct:   91 KAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKS 265          
BLAST of CN185662 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.454e-56
Identity = 106/175 (60.57%), Postives = 131/175 (74.86%), Query Frame = -2
Query:  288 KSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAFIQHEWRPKSLFTISGEVDTRAIEKS 812
            KSI + +VPDQRSGK+E QY HEYAG++  +G  +NP+           +++G D+SFDTAT +FTK NA LS T  DLIASL LN+ GDTL ASYYH+V   + TAVGAEL+HS S NE+TL  G+QH+LDP T++K R NNYG ASA +QHEWRPKS  TISG+VDT+AIEKS
Sbjct:   92 KSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKS 266          
BLAST of CN185662 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 7.156e-55
Identity = 105/175 (60.00%), Postives = 134/175 (76.57%), Query Frame = -2
Query:  288 KSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXVALGTDLSFDTATGNFTKCNAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAFIQHEWRPKSLFTISGEVDTRAIEKS 812
            K I    +PD +SGK E+QY H+YAGIST +GFTA PI           ++LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+ LNASYY IVSP  +T VGAE++H+F++ EN +T+GTQHALDPLT+VKARVNN G A+A IQHEWRPKS FT+SGEVD++AI+KS
Sbjct:   91 KVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKS 263          
The following BLAST results are available for this feature:
BLAST of CN185662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC2_SOLTU2.140e-7580.00Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU2.534e-6869.54Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC1_ARATH2.007e-6570.29Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ2.297e-6168.00Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT3.317e-6068.57Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_PEA6.255e-5963.43Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC_MAIZE8.454e-5660.57Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC2_ARATH7.156e-5560.00Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185662 ID=CN185662; Name=CN185662; organism=Citrus sinensis; type=EST; length=813bp
TTTTTTTTTTTTTTTTTAAGAAGAAACAGCCAATGTTGATTTAGGACATC
CCCCTTAATTATTTTTACAACCCGCAGCCACAACATTCGTGAACCTCAAA
AGCACCCCACGGGGAAATCACAAGTTTTAGGAAAGGGGAAAAAAAAAGAA
AGAATATAGGTTTCACATCATTTTTCGTAACAATTATTGTACTCCACCAC
TCAAAAACATTGTTTCTCTCCTTCCCCCGACGCCAAGATTAATTGCTTAG
CCTATGGCTTGAGAGCTAACGCCAGCCCAATTTTAGCACTCTTTTCAATG
GCCCTGGTGTCTACCTCTCCTGAGATAGTAAATAGAGATTTGGGACGCCA
CTCGTGCTGGATAAAAGCACTTGCCCTGCCATAGTTGTTCACACGGGCCT
TCACCGAGGTCAAAGGATCAAGAGCATGCTGAGTTCCGATTGTCAGAGTG
TTCTCGTTGCTTGAAAAGCTATGGGTCAGCTCCGCCCCAACAGCGGTATT
GGTCAGTGGGCTTACAATGTGGTAGTAGGAAGCATTAAGGGTGTCACCTT
TGTCATTCAATGTCAGGGAAGCAATGAGGTCAATATGTGTATAGCTCAAC
CCCGCATTGCACTTGGTGAAGTTGCCAGTGGCAGTATCAAATGAGAGATC
AGTCCCAAGAGCAACAGAATTGTTTCCAACCACACCAGAAAAGTTAACAA
TGGGATTTGCAGTGAATCCAATGCCAGTGCTTATTCCAGCATATTCATGC
TGATATTGGAGTTCCACCTTGCCAGATCTCTGATCAGGAACGATAAAGCT
AAAGATTGACTTG
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