CN185644

Overview
NameCN185644
Unique NameCN185644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:453..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.740e-53
Identity = 106/174 (60.92%), Postives = 117/174 (67.24%), Query Frame = -2
Query:  288 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKAPAT 806
            GKSLE++++ SYNKGD+LPAFNNAAQ WNHDFFW                 LIERDFGS            ATQFGSGWAWL Y+            P P E D  L+V+K+PNAVNPLVW  Y  LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSW++VS RLE AKA  T
Sbjct:   74 GKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALIT 246          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.434e-47
Identity = 96/170 (56.47%), Postives = 109/170 (64.12%), Query Frame = -2
Query:  297 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 806
            GK+LED+++ +YNKG  LPAFNNAAQAWNH FFW                 LI RDFGS            ATQFGSGWAWL YK                 ++K L +VKTPNA NPLV  Y+ LLTIDVWEHAYYLDFQNRRPDYIS+FM+KLVSWE+VS RL+ A A
Sbjct:   49 GKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKP----------------EEKKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLKAATA 202          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 177.178 bits (448), Expect = 9.570e-44
Identity = 93/170 (54.71%), Postives = 103/170 (60.59%), Query Frame = -2
Query:  297 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 806
            GK LE ++ ++YN GDLLPAFNNAAQAWNH+FFW                 L+ERDF S            ATQFG+GWAWL Y                   ++ L VVKTPNAVNPLV     LLTIDVWEHAYYLDFQNRRPDYI  FM  LVSWE+VS RLE AKA
Sbjct:   58 GKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS------------------NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.288e-29
Identity = 71/163 (43.56%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  312 SLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 800
            SLEDV+  S+     +  FNNAAQ WNH FFW                  I+  FGS            ATQFGSGWAWLV                  +   +L V KTPNA NPLV     LLT+DVWEHAYYLDFQN RP +I  F+D LV+W+ V++ L
Sbjct:   53 SLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKAGGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWLV------------------DDGGTLKVTKTPNAENPLVHGQKPLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVAQNL 197          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 6.658e-29
Identity = 71/167 (42.51%), Postives = 86/167 (51.50%), Query Frame = -2
Query:  303 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 803
            +S+EDV+ A          FNNAAQAWNH F+W                  I  DFGS            ATQFGSGWAWLV                    + +L V KT NA NP+    + LLT+DVWEHAYYLD+QNRRPDYI+ F+ KLV+W+ V+  L  A
Sbjct:   51 QSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLVLD------------------NGTLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVAANLAAA 199          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.142e-27
Identity = 69/170 (40.59%), Postives = 83/170 (48.82%), Query Frame = -2
Query:  297 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 806
            G+ +E V+ A          FNNAAQAWNH F+W                  I  DFGS            ATQFGSGWAWLV                    + +L + KT NA  P+    + LLTIDVWEHAYYLD+QNRRPDYIS F++KL +W+  S     A A
Sbjct:   50 GQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKPNGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLVLD------------------NGTLKITKTGNADTPIAHGQTPLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANYAAAIA 201          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 2.142e-27
Identity = 64/158 (40.51%), Postives = 81/158 (51.27%), Query Frame = -2
Query:  330 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 803
            KSLE+V+  ++        FNNAAQ WNH FFW                  I +DFGS            ATQFGSGWAWL+                  +   +L V KTPNA NPL     +LLT+DVWEHAYY+DF+N RP +I  ++D LV+W+
Sbjct:   52 KSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLI------------------DDGGTLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWD 191          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.388e-26
Identity = 64/167 (38.32%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  312 GKSLEDVVIASYNKGDLLPA--FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 806
            GKS+E++V  +Y  G +  +  FNNA+Q WNH  FW                  +   FGS            A QFGSGWAWLV                  + D +L + KT N VNPL +  ++LL  DVWEH+YY+DF+N+RP Y++ F+DKLV+WE+V+ R+
Sbjct:   51 GKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGPGEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLV-----------------KDSDGALKITKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWENVASRM 200          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.833e-25
Identity = 60/164 (36.59%), Postives = 80/164 (48.78%), Query Frame = -2
Query:  312 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 803
            K+LE+++  S ++   +  FNNAAQ WNH FFW                  I  DFGS              QFGSGWAWLVY                   +  L +VKT NA  P+      LL  DVWEHAYY+D++N+RPDY+ +F+  +++WE V   L
Sbjct:   63 KNLEEIIDWS-SQNQNIAIFNNAAQVWNHTFFWHSIKPNGGGKPSGKILKQINEDFGSFEEFCEQFKAEATGQFGSGWAWLVYH------------------NNRLQIVKTANAGTPIANGMQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVENNL 207          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.299e-24
Identity = 59/164 (35.98%), Postives = 78/164 (47.56%), Query Frame = -2
Query:  312 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 803
            K LE+++  S    +    FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWLVY                   D  L ++KT NA  P+      LL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:   63 KDLEEIIEWSSQNSNAA-IFNNAAQIWNHSFFWHSIKPQGGGKPSGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVYH------------------DNRLQIIKTANAGTPIANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
The following BLAST results are available for this feature:
BLAST of CN185644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
SODF_SOYBN1.740e-5360.92Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL2.434e-4756.47Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH9.570e-4454.71Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_PLEBO2.288e-2943.56Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNY36.658e-2942.51Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_SYNE72.142e-2740.59Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_ANASP2.142e-2740.51Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_RHOCA1.388e-2638.32Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_RICBR5.833e-2536.59Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_RICFE1.299e-2435.98Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185644 ID=CN185644; Name=CN185644; organism=Citrus sinensis; type=EST; length=807bp
CCCCTTTTTTTTTCTAACAGGCCTGAAAGTATTATTAGTCATCCAAAAAC
TATTTCCCATAAGTAACTCATACATATACTTTGATAGGTTTTATTATACC
CTGATTGTTATAAGAAGAAACCAACACTTTGACAATAGAGATTACTAATC
ACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGT
ATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTC
TCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCT
TTGGCAGTTTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTGTC
CATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAAT
AAGCATGCTCCCATACATCAATAGTAAGGAGAGACGAGTAATCCCAGACA
AGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTT
CTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTGG
CTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCC
GCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAAT
CAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCACCAGGTTTCATGG
ATTCCCAGAAGAAGTCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCT
GGAAGCAAGTCACCCTTGTTGTAAGAAGCAATAACGACATCTTCCAATGA
CTTTCCA
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