DC887977

Overview
NameDC887977
Unique NameDC887977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1247 contig Csv1_Contig1247:198..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METC_ARATH (Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.640e-50
Identity = 98/115 (85.22%), Postives = 106/115 (92.17%), Query Frame = -3
Query:  167 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 511
            PRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD A +T PL
Sbjct:  350 PRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 464          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CBL_SCHPO (Cystathionine beta-lyase OS=Schizosaccharomyces pombe GN=str3 PE=2 SV=4)

HSP 1 Score: 118.627 bits (296), Expect = 1.651e-26
Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = -3
Query:  182 KVNYAGL-PEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 499
            +VN+ GL P+     + YS A+G G+V+S  TG + +SK +V TTK F I+VSFG+V SLISMP +MSHASI  EVR ARGL+EDL+RI VGIE+V+DL +DL+ AL
Sbjct:  276 QVNFPGLDPDAKSTAIFYSFARGPGAVMSVFTGDVEVSKTIVNTTKLFEISVSFGAVNSLISMPAYMSHASIKKEVRDARGLSEDLIRICVGIENVDDLKADLENAL 382          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23
Identity = 52/111 (46.85%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  182 PRVKKVNYAGLPEHPGHELHYSQAKG-AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 511
            P+V++V Y GLP HP HE+   Q KG  G V+ F+ GS+  S+  +E  K F++  S G V+SLI +P  M+HAS+P E R   G+++ L+R+SVGIED+NDL++D+ +AL
Sbjct:  274 PKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CGL2_CAEEL (Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.493e-23
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = -3
Query:  179 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 508
            R++ V Y  LP HP HE+H  Q KG   ++SF L G L  S+  +   K F++  S G  +SL  +P  M+HAS+P E R   G+T++L+RISVGIED++DL++DLD+AL+
Sbjct:  276 RIESVLYPALPSHPQHEVHEKQTKGMSGMISFYLKGELQESRAFLSALKVFTLAESLGGYESLAELPSIMTHASVPAETRIVLGITDNLIRISVGIEDLDDLVADLDQALK 386          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METC_BACSU (Cystathionine beta-lyase metC OS=Bacillus subtilis GN=metC PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.223e-22
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = -3
Query:  179 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 511
            P VK+V Y GL +HPG E H SQ+ GAG+VLSF   S    K +VE        VS G+V+S++S P  MSHA++P E R+ RG+T+ L+R+SVG+E  +DL  D ++AL+
Sbjct:  272 PAVKRVYYPGLADHPGAETHKSQSTGAGAVLSFELESKEAVKKLVENVSLPVFAVSLGAVESILSYPATMSHAAMPKEEREKRGITDGLLRLSVGVEHADDLEHDFEQALK 382          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CGL_MOUSE (Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.937e-21
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  179 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 511
            PRV+KV Y GLP HP HEL   Q  G   ++SF + G+L  +K  ++  K F++  S G  +SL  +P  M+HAS+P + R   G+ + L+R+SVG+ED  DL+ DLD+AL+
Sbjct:  283 PRVEKVVYPGLPSHPQHELAKRQCSGCPGMVSFYIKGALQHAKAFLKNLKLFTLAESLGGYESLAELPAIMTHASVPEKDRATLGINDTLIRLSVGLEDEQDLLEDLDRALK 394          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CGL_BOVIN (Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.309e-20
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  179 PRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 511
            P+V+KV Y GLP HP HEL   Q  G  G V  ++ GSL  ++  ++  K F++  S G  +SL  +P  M+HAS+P   R+  G+++ L+R+SVG+ED  DL+ DLD+AL+
Sbjct:  284 PQVEKVIYPGLPSHPQHELAKRQCTGCPGMVTFYIKGSLQHAETFLQNLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGISDTLIRLSVGLEDKQDLLDDLDQALK 395          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.145e-20
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = -3
Query:  182 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 511
            P V+ + Y G   HPGHEL  +Q  G G ++SF  GS       +   K F+I  S G+V+SLIS+P  M+HASIP E R   G+T+ L+RISVGIED  DL+ D+ +AL
Sbjct:  267 PAVQTLYYPGSSNHPGHELAKTQGAGFGGMISFDIGSEERVDAFLGNLKLFTIAESLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQAL 376          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: STR3_YEAST (Cystathionine beta-lyase OS=Saccharomyces cerevisiae GN=STR3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.719e-20
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  182 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY--FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 508
            +  K  + GL  +P  +LH S   G G+VLSF TGS   SK +V + K   +++TVSFG V SL+SMPC MSHASI  E+R+ R   EDLVR+  GIE++ DL  DL  A+
Sbjct:  294 KATKTRFVGLRSNPDFKLHKSFNNGPGAVLSFETGSFEHSKRLVSSKKLSIWAVTVSFGCVNSLLSMPCKMSHASIDPELRKERDFPEDLVRLCCGIENIVDLKKDLLAAM 404          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.146e-19
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = -3
Query:  182 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 505
            V KV Y GL  HPGHE+   Q    G ++SF        K  VE   YF++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++D+ +AL
Sbjct:  270 VSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELTDENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEAL 377          
The following BLAST results are available for this feature:
BLAST of DC887977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
METC_ARATH1.640e-5085.22Cystathionine beta-lyase, chloroplastic OS=Arabido... [more]
CBL_SCHPO1.651e-2657.94Cystathionine beta-lyase OS=Schizosaccharomyces po... [more]
CGL_DICDI2.232e-2346.85Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
CGL2_CAEEL6.493e-2345.95Putative cystathionine gamma-lyase 2 OS=Caenorhabd... [more]
METC_BACSU3.223e-2247.75Cystathionine beta-lyase metC OS=Bacillus subtilis... [more]
CGL_MOUSE7.937e-2143.75Cystathionine gamma-lyase OS=Mus musculus GN=Cth P... [more]
CGL_BOVIN2.309e-2042.86Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=... [more]
MCCB_BACSU5.145e-2047.27Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
STR3_YEAST6.719e-2048.65Cystathionine beta-lyase OS=Saccharomyces cerevisi... [more]
METC_LACLM1.146e-1943.52Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]

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Properties
Property NameValue
Genbank descriptionDC887977 EIC Citrus sinensis cDNA clone EIC1203 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887977 ID=DC887977; Name=DC887977; organism=Citrus sinensis; type=EST; length=513bp
GAAAGTTTTGGCTTTCCATTTCCATGGACAATCGGAATATCTAGACTGAG
ATCGTCCATGCACCAGAAAAAGATATATATGAAATCAAATCTGCCAATTT
GGAGAGCGCTGGGCCTAAAACATTATCCATAATACCGAATGAAGGAGAAT
CATGAGTAATACACTACAGAGGCCCAGTCCTGAGTGCTTTGTCTAAATCA
GAAATCAAGTCATTTACATCTTCAATTCCCACAGATATACGGACAAGATC
TTCAGTTAGACCTCTTGCTTGGCGCACTTCAACTGGTATGCTGGCATGGG
ACATAAAGCAGGGCATGCTTATGAGTGACTTTACACTCCCAAAGCTGACC
GTAATGCTGAAGTACTTTGTAGTCTCAACAACATGCTTTGAGAGTGCTAG
TGACCCTGTCAGAAAGCTAAGTACAGAGCCAGCCCCCTTTGCCTGAGAAT
AGTGTAACTCATGTCCAGGATGCTCAGGGAGACCTGCATAGTTAACTTTC
TTCACTCTCGGAT
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