DC887974

Overview
NameDC887974
Unique NameDC887974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13761 contig Csv1_Contig13761:51..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 63/82 (76.83%), Postives = 66/82 (80.49%), Query Frame = -1
Query:  430 MTFXXXXXXXXXXXXXHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 675
            MTF             HVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:    1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 62/82 (75.61%), Postives = 65/82 (79.27%), Query Frame = -1
Query:  430 MTFXXXXXXXXXXXXXHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 675
            MTF             HV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 62/82 (75.61%), Postives = 65/82 (79.27%), Query Frame = -1
Query:  430 MTFXXXXXXXXXXXXXHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 675
            MTF             HV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.481e-28
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = -1
Query:  430 MTFXXXXXXXXXXXXXHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 675
            MTF             HVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+DGY LPKLYAK+ +CVSCAIH+H
Sbjct:    1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAH 82          
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS26_OCTVU (40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = -1
Query:  433 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 624
            VK+IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A VY+ Y LPKLYAK+ YCVSCAIHS
Sbjct:   18 VKYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSCAIHS 81          
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  433 MTFXXXXXXXXXXXXXHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 675
            MTF             HV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y  Y LPKLY K+ YC++CAIHS
Sbjct:    1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHS 81          
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS26_DROME (40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.533e-22
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = -1
Query:  433 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 624
            VK +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA ++D Y LPKLYAK+ YCVSCAIHS
Sbjct:   18 VKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHS 81          
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS26_ANOGA (40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.533e-22
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = -1
Query:  433 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 624
            VK +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A VY  Y LPKLYAK+ YCVSCAIHS
Sbjct:   18 VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIHS 81          
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = -1
Query:  433 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 624
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of DC887974 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = -1
Query:  433 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 624
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
The following BLAST results are available for this feature:
BLAST of DC887974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS263_ARATH1.026e-2976.8340S ribosomal protein S26-3 OS=Arabidopsis thalian... [more]
RS262_ARATH3.898e-2975.6140S ribosomal protein S26-2 OS=Arabidopsis thalian... [more]
RS261_ARATH3.898e-2975.6140S ribosomal protein S26-1 OS=Arabidopsis thalian... [more]
RS26_ORYSJ1.481e-2871.9540S ribosomal protein S26 OS=Oryza sativa subsp. j... [more]
RS26_OCTVU1.586e-2271.8840S ribosomal protein S26 OS=Octopus vulgaris GN=R... [more]
RS26_CAEEL1.586e-2260.4940S ribosomal protein S26 OS=Caenorhabditis elegan... [more]
RS26_DROME3.533e-2270.3140S ribosomal protein S26 OS=Drosophila melanogast... [more]
RS26_ANOGA3.533e-2270.3140S ribosomal protein S26 OS=Anopheles gambiae GN=... [more]
RS26_RAT1.028e-2170.3140S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]
RS26_PIG1.028e-2170.3140S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P... [more]

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Properties
Property NameValue
Genbank descriptionDC887974 EIC Citrus sinensis cDNA clone EIC1197 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887974 ID=DC887974; Name=DC887974; organism=Citrus sinensis; type=EST; length=687bp
GGCAATAGATAATTAAGTCAAGGCAAGACATTTAACTATCGGTTAAACTT
AAGCAAAACAGAACAACGAACATTTTACTTCAATCACTCCATCAAAATTC
TCTAGGGTTTTGATTCAAACTTGTGACAGTAAACAGTTCTCTGATGCACG
ACAACAAAACACAAAACTAACATAAAAGTTTGCAGTGCTCTAATTAAACA
GACCCACATATCTGATACCACCACATAAAAATCTCAAAAGCCTCAAAGGA
CCAGAAGCACCGACAGCAGAAAGCTTTCAAGCACGAGCAGCAGCTGGAGC
TCCAGCTGGACCACCAGCACGTGGGCCTTGACCAAGAGCACCACCAGCCT
TTGGCACATCATCCCTGCGCCTGAAGCGTTGTGGGGGCTCACGGATCCTC
CTGTTAGTACGGGAACGAACTCTCACCACATGAGAGTGGATCGCACACGA
GACGCAGTACTGCATCTTAGCATATAACTTAGGAAGAGTGTAACCGTCAT
AAACACACGCCTCCTGAACATCCCTAACAGCAGCTTGCTCAACAATGTTC
CTCACCAAAAACCTCTTAATCGCCTTGTCCTTAGGGCAGCATTTGCCGCA
GTTAGAGCAGCGGATGAACTTGACATGGCCACGGCCGTGCTTGTTCCTTC
CTCCGTTCCTCCGCTTGAACGTCATTTTCTTGGTATT
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