CN185594

Overview
NameCN185594
Unique NameCN185594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4430 contig Csv1_Contig4430:33..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 6 OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.173e-84
Identity = 155/210 (73.81%), Postives = 175/210 (83.33%), Query Frame = 1
Query:   76 SEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            +EG+QQ HL+LA+K FLLTHPDV DIEKV LK EV   +++H MA  YETL+A SVL++DQS+L+SMR                   NLGESEVREAHLAK+L++I+I DKEKALEQLK+TE KTVAVGQKMD+VFYTLQL FFYMDFDL+SKSIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYE+FPY
Sbjct:    5 AEGSQQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDLDQSLLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLKLTEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYEIFPY 214          
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_ORYSJ (26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica GN=RPN7 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.533e-81
Identity = 153/209 (73.21%), Postives = 170/209 (81.34%), Query Frame = 1
Query:   79 EGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            EG QQ HLVLAHK FLL+HPDV D+ KV L+ +V + VK+ DMAS YE+L A  VLE D ++L  MR                   NLGESEVREAHLAKSL++I++G+KEKALEQLKVTE KTVAVGQKMDLVF+TLQ+GFFYMDFDLISKSIDKAK LFEEGGDWERKNRLKVYEGLYCM+TRNFKKAASLFLDSISTFTTYELFPY
Sbjct:    8 EGKQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDAALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTEGKTVAVGQKMDLVFHTLQIGFFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKAASLFLDSISTFTTYELFPY 216          
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_MOUSE (26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus GN=Psmd6 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.164e-46
Identity = 96/213 (45.07%), Postives = 140/213 (65.73%), Query Frame = 1
Query:   70 MDSEGT-QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            ++ EG  +   L +A  RFLL+ P+ +      ++ E+ + V+ ++MA +YE L      +MD  +L  M+                   NLGESE+R+A +AK+ +  QIGDKE AL   + T  KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY+GLYC++ R+FK+AA LFLD++STFT+YEL  Y
Sbjct:    6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVREELMAAVRENNMAPYYEALCKSLDWQMDVDLLSKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDY 216          
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_BOVIN (26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus GN=PSMD6 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.820e-46
Identity = 95/213 (44.60%), Postives = 141/213 (66.20%), Query Frame = 1
Query:   70 MDSEGT-QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            ++ EG  +   L +A  RFLL+ P+ +      ++ E+ + V+ ++MA +YE L      +MD  +L+ M+                   NLGESE+R+A +AK+ +  +IGDKE AL   + T  KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY+GLYC++ R+FK+AA LFLD++STFT+YEL  Y
Sbjct:    6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVRDELMAAVRDNNMAPYYEALCKSLEWQMDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRRTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDY 216          
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_HUMAN (26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.402e-45
Identity = 94/213 (44.13%), Postives = 141/213 (66.20%), Query Frame = 1
Query:   70 MDSEGT-QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            ++ EG  +   L +A  RFLL+ P+ +      ++ E+ + V+ ++MA +YE L      ++D  +L+ M+                   NLGESE+R+A +AK+ +  +IGDKE AL   + T  KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY+GLYC++ R+FK+AA LFLD++STFT+YEL  Y
Sbjct:    6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVRDELMAAVRDNNMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDY 216          
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_DROME (26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila melanogaster GN=Rpn7 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.515e-42
Identity = 88/213 (41.31%), Postives = 137/213 (64.32%), Query Frame = 1
Query:   70 MDSEGTQQ-AHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            ++ +G ++  +L LA  +FLLT  + +  +   LK ++   ++  +MA +YE + +E    +D+ +L  M+                   NLGE EVREA+L KS +  +IGDK  A    + T  KTV++G ++D+VF+ ++LG FY+D DLI+++IDKAK L EEGGDW+R+NRLKVY+G+Y ++ R+FK AA+ FLD++STFT+YEL  Y
Sbjct:    6 LEEQGLEKNPNLELAQTKFLLTLAEYK--QDAALKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEVREANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIEEGGDWDRRNRLKVYQGVYSVAVRDFKAAATFFLDTVSTFTSYELMDY 216          
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_CAEEL (26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis elegans GN=rpn-7 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 87/202 (43.07%), Postives = 121/202 (59.90%), Query Frame = 1
Query:  100 LVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            L L+  RF+L HP+V    K     ++   +K  DMA FYE + A+  + +D + L +M+                   NLGESEVR+  L K  +Y QIGDK+ AL+    T  KTV +G ++D+VF  +++G F++D  LI+K I KAK L E+GGDWERKNRL+ YE LY MS R+F  AA LFL+++ TF +YEL  Y
Sbjct:   29 LELSQTRFMLNHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFKIVVDATQLAAMKAANQKKIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGMGYRIDVVFAMIRVGLFFLDHHLINKFITKAKELMEQGGDWERKNRLRSYEALYRMSVRDFAGAADLFLEAVPTFGSYELMTY 230          
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_DICDI (26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium discoideum GN=psmD6 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 73/172 (42.44%), Postives = 113/172 (65.70%), Query Frame = 1
Query:  190 VKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            ++ H M   Y+ LV +     DQ ++  ++                   N GESE+REA+LAKS FY +IGDK+ A+E  + T  KTV +GQK+D+VF  +++G F+MD D+++++++KA+SL EEGGDW+RKNRLK YE +Y MS R FK+A+ L+L+++++FT+ E   Y
Sbjct:   38 IETHKMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREAYLAKSDFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHDIVTRNLEKAQSLVEEGGDWDRKNRLKTYEAVYKMSIRQFKEASDLYLETVASFTSTEFIDY 209          
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: RPN7_SCHPO (Probable 26S proteasome regulatory subunit rpn7 OS=Schizosaccharomyces pombe GN=rpn7 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 70/216 (32.41%), Postives = 114/216 (52.78%), Query Frame = 1
Query:   70 MDSEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLV----AESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            M  +    + L ++   F L+ P +++  +  L   +FS ++ HD+A  Y+ L       + ++ D + L+SM                      GE E+ EA   K+ +Y  I D+E+ ++    T  +    G K+D++F  ++L + Y D  ++ + ++K K L E+GGDWERKNRLK Y+G+Y MS RNF  AA L LD +STF++ EL PY
Sbjct:   13 MTEKARTVSDLTISQAIFELSSPFLENKSQKALD-TLFSAIRDHDLAPLYKYLSENPKTSASIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGVQLCDETFERATLTGMKIDVLFSKIRLAYVYADMRVVGQLLEKLKPLIEKGGDWERKNRLKAYQGIYLMSIRNFSGAADLLLDCMSTFSSTELLPY 227          
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: RPN7_YEAST (26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae GN=RPN7 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 70/221 (31.67%), Postives = 111/221 (50.23%), Query Frame = 1
Query:  106 LAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVL------DSMRTXXXXXXXXXXXXXXXXXXNL---------------GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705
            ++ K FLLT   V   ++      V + +K  +MA +Y+ L  E ++   QS L      DS+                     +               GE E  +A +    +Y QIGDK+ A + L  + SK ++ G K+D++    +LGFFY D   + + ++   S+ E+GGDWER+NR K Y G++C++ RNFK+AA L +DS++TFT+ EL  Y
Sbjct:   26 VSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSY 246          
The following BLAST results are available for this feature:
BLAST of CN185594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD6_ARATH1.173e-8473.81Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD6_ORYSJ3.533e-8173.2126S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_MOUSE2.164e-4645.0726S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_BOVIN4.820e-4644.6026S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_HUMAN1.402e-4544.1326S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_DROME5.515e-4241.3126S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_CAEEL3.952e-4043.0726S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_DICDI1.406e-3742.4426S proteasome non-ATPase regulatory subunit 6 OS=... [more]
RPN7_SCHPO1.319e-2732.41Probable 26S proteasome regulatory subunit rpn7 OS... [more]
RPN7_YEAST1.612e-2531.6726S proteasome regulatory subunit RPN7 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185594 ID=CN185594; Name=CN185594; organism=Citrus sinensis; type=EST; length=705bp
ATGCTCCTTTCTCAAGCAAAGAACCAACTCGGAACGTAACTCAGTGAGTC
ATCAGCAGCCGAATTAGCCATGGACAGCGAAGGAACTCAGCAGGCGCATC
TCGTACTCGCTCACAAGCGCTTCCTTCTTACGCACCCAGACGTTCAAGAC
ATCGAGAAGGTCGGTCTCAAAGGGGAGGTCTTCTCAATGGTCAAAGCCCA
CGACATGGCCTCGTTTTATGAAACCCTAGTGGCTGAGTCTGTGCTGGAGA
TGGATCAAAGCGTTCTTGATTCGATGCGTACGAAGATCGAAGACGAGCTT
AAGAAACTTGATGATAAGATTGCTGATGCTGAAGAAAATTTGGGTGAAAG
CGAAGTCCGTGAAGCTCATCTAGCCAAATCCTTATTTTATATTCAGATTG
GTGACAAGGAGAAAGCATTGGAACAACTGAAGGTAACAGAAAGCAAAACA
GTCGCAGTTGGGCAAAAGATGGACTTGGTGTTCTATACACTGCAGCTTGG
ATTTTTCTATATGGATTTTGATCTTATTTCCAAGAGCATTGATAAAGCGA
AGAGCCTGTTTGAAGAGGGAGGTGATTGGGAAAGGAAGAACCGTTTGAAG
GTTTATGAGGGCTTGTACTGCATGTCCACTCGAAATTTTAAGAAGGCGGC
CAGTTTGTTTTTGGATTCCATTTCAACATTCACAACTTATGAGCTATTCC
CATAT
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