CN185594
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 6 OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 1.173e-84 Identity = 155/210 (73.81%), Postives = 175/210 (83.33%), Query Frame = 1 Query: 76 SEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 +EG+QQ HL+LA+K FLLTHPDV DIEKV LK EV +++H MA YETL+A SVL++DQS+L+SMR NLGESEVREAHLAK+L++I+I DKEKALEQLK+TE KTVAVGQKMD+VFYTLQL FFYMDFDL+SKSIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYE+FPY Sbjct: 5 AEGSQQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDLDQSLLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLKLTEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYEIFPY 214
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_ORYSJ (26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica GN=RPN7 PE=2 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 3.533e-81 Identity = 153/209 (73.21%), Postives = 170/209 (81.34%), Query Frame = 1 Query: 79 EGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 EG QQ HLVLAHK FLL+HPDV D+ KV L+ +V + VK+ DMAS YE+L A VLE D ++L MR NLGESEVREAHLAKSL++I++G+KEKALEQLKVTE KTVAVGQKMDLVF+TLQ+GFFYMDFDLISKSIDKAK LFEEGGDWERKNRLKVYEGLYCM+TRNFKKAASLFLDSISTFTTYELFPY Sbjct: 8 EGKQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDAALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTEGKTVAVGQKMDLVFHTLQIGFFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKAASLFLDSISTFTTYELFPY 216
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_MOUSE (26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus GN=Psmd6 PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.164e-46 Identity = 96/213 (45.07%), Postives = 140/213 (65.73%), Query Frame = 1 Query: 70 MDSEGT-QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 ++ EG + L +A RFLL+ P+ + ++ E+ + V+ ++MA +YE L +MD +L M+ NLGESE+R+A +AK+ + QIGDKE AL + T KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY+GLYC++ R+FK+AA LFLD++STFT+YEL Y Sbjct: 6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVREELMAAVRENNMAPYYEALCKSLDWQMDVDLLSKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDY 216
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_BOVIN (26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus GN=PSMD6 PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 4.820e-46 Identity = 95/213 (44.60%), Postives = 141/213 (66.20%), Query Frame = 1 Query: 70 MDSEGT-QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 ++ EG + L +A RFLL+ P+ + ++ E+ + V+ ++MA +YE L +MD +L+ M+ NLGESE+R+A +AK+ + +IGDKE AL + T KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY+GLYC++ R+FK+AA LFLD++STFT+YEL Y Sbjct: 6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVRDELMAAVRDNNMAPYYEALCKSLEWQMDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRRTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDY 216
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_HUMAN (26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.402e-45 Identity = 94/213 (44.13%), Postives = 141/213 (66.20%), Query Frame = 1 Query: 70 MDSEGT-QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 ++ EG + L +A RFLL+ P+ + ++ E+ + V+ ++MA +YE L ++D +L+ M+ NLGESE+R+A +AK+ + +IGDKE AL + T KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY+GLYC++ R+FK+AA LFLD++STFT+YEL Y Sbjct: 6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVRDELMAAVRDNNMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDY 216
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_DROME (26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila melanogaster GN=Rpn7 PE=1 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 5.515e-42 Identity = 88/213 (41.31%), Postives = 137/213 (64.32%), Query Frame = 1 Query: 70 MDSEGTQQ-AHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 ++ +G ++ +L LA +FLLT + + + LK ++ ++ +MA +YE + +E +D+ +L M+ NLGE EVREA+L KS + +IGDK A + T KTV++G ++D+VF+ ++LG FY+D DLI+++IDKAK L EEGGDW+R+NRLKVY+G+Y ++ R+FK AA+ FLD++STFT+YEL Y Sbjct: 6 LEEQGLEKNPNLELAQTKFLLTLAEYK--QDAALKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEVREANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIEEGGDWDRRNRLKVYQGVYSVAVRDFKAAATFFLDTVSTFTSYELMDY 216
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_CAEEL (26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis elegans GN=rpn-7 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40 Identity = 87/202 (43.07%), Postives = 121/202 (59.90%), Query Frame = 1 Query: 100 LVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 L L+ RF+L HP+V K ++ +K DMA FYE + A+ + +D + L +M+ NLGESEVR+ L K +Y QIGDK+ AL+ T KTV +G ++D+VF +++G F++D LI+K I KAK L E+GGDWERKNRL+ YE LY MS R+F AA LFL+++ TF +YEL Y Sbjct: 29 LELSQTRFMLNHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFKIVVDATQLAAMKAANQKKIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGMGYRIDVVFAMIRVGLFFLDHHLINKFITKAKELMEQGGDWERKNRLRSYEALYRMSVRDFAGAADLFLEAVPTFGSYELMTY 230
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: PSMD6_DICDI (26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium discoideum GN=psmD6 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37 Identity = 73/172 (42.44%), Postives = 113/172 (65.70%), Query Frame = 1 Query: 190 VKAHDMASFYETLVAESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 ++ H M Y+ LV + DQ ++ ++ N GESE+REA+LAKS FY +IGDK+ A+E + T KTV +GQK+D+VF +++G F+MD D+++++++KA+SL EEGGDW+RKNRLK YE +Y MS R FK+A+ L+L+++++FT+ E Y Sbjct: 38 IETHKMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREAYLAKSDFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHDIVTRNLEKAQSLVEEGGDWDRKNRLKTYEAVYKMSIRQFKEASDLYLETVASFTSTEFIDY 209
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: RPN7_SCHPO (Probable 26S proteasome regulatory subunit rpn7 OS=Schizosaccharomyces pombe GN=rpn7 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27 Identity = 70/216 (32.41%), Postives = 114/216 (52.78%), Query Frame = 1 Query: 70 MDSEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLV----AESVLEMDQSVLDSMRTXXXXXXXXXXXXXXXXXXNLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 M + + L ++ F L+ P +++ + L +FS ++ HD+A Y+ L + ++ D + L+SM GE E+ EA K+ +Y I D+E+ ++ T + G K+D++F ++L + Y D ++ + ++K K L E+GGDWERKNRLK Y+G+Y MS RNF AA L LD +STF++ EL PY Sbjct: 13 MTEKARTVSDLTISQAIFELSSPFLENKSQKALD-TLFSAIRDHDLAPLYKYLSENPKTSASIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGVQLCDETFERATLTGMKIDVLFSKIRLAYVYADMRVVGQLLEKLKPLIEKGGDWERKNRLKAYQGIYLMSIRNFSGAADLLLDCMSTFSSTELLPY 227
BLAST of CN185594 vs. ExPASy Swiss-Prot
Match: RPN7_YEAST (26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae GN=RPN7 PE=1 SV=3) HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25 Identity = 70/221 (31.67%), Postives = 111/221 (50.23%), Query Frame = 1 Query: 106 LAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVL------DSMRTXXXXXXXXXXXXXXXXXXNL---------------GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY 705 ++ K FLLT V ++ V + +K +MA +Y+ L E ++ QS L DS+ + GE E +A + +Y QIGDK+ A + L + SK ++ G K+D++ +LGFFY D + + ++ S+ E+GGDWER+NR K Y G++C++ RNFK+AA L +DS++TFT+ EL Y Sbjct: 26 VSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSY 246 The following BLAST results are available for this feature:
BLAST of CN185594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185594 ID=CN185594; Name=CN185594; organism=Citrus sinensis; type=EST; length=705bpback to top |