CN185577

Overview
NameCN185577
Unique NameCN185577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185577_ssr91 microsatellite CN185577_ssr91:91..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2493 contig Csv1_Contig2493:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD2_BACSU (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 2.577e-24
Identity = 55/114 (48.25%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M +++IG+ GLAVMG+NLALNI  +GF +SVYNR++SK +E ++ AK +  +  Y     E FV S++ PR I+++VKAG   D TI++L  ++EK D +IDGGN +Y++T+RR
Sbjct:    1 MSKQQIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKNVVGTYSI---EEFVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRR 111          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_SCHPO (6-phosphogluconate dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe GN=SPBC660.16 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.499e-24
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 2
Query:  323 GLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            GL GLAVMGQNL LN A+KGF +  YNRTTS+VDE +  A +     + G    E FV  ++KPRV I+LVKAG PVD  I+ L+  +EKGD ++DGGN  Y +T RR
Sbjct:   10 GLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFL--ANEAKGKSIVGAHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRR 115          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLMU (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia muridarum GN=gnd PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.499e-24
Identity = 56/115 (48.70%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG-NLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M    IGL GLAVMG+NL LN+ + GF +SVYNR+  K +E +   K+ G N+ L GF   E FV S+++PR I++++KAG PVD+ I +L  ++E+GD +IDGGN +Y ++ERR
Sbjct:    1 MAPADIGLIGLAVMGKNLVLNMIDHGFAVSVYNRSPEKTEEFL---KEHGENISLQGFTAIEEFVQSLKRPRKIMIMIKAGAPVDEMISSLLPFLEEGDILIDGGNSYYLDSERR 112          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_BUCAP (6-phosphogluconate dehydrogenase, decarboxylating OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gnd PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.279e-23
Identity = 49/114 (42.98%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M+++++G+ G+AVMG+NLALNI  K + +S++NRT S  +E +   K++   P +  +D   FV+S++KPR I+++VK+G P D+TI+ +  Y+ KGD +IDGGN +Y+++ RR
Sbjct:    1 MLKQQVGVIGMAVMGRNLALNIESKKYTVSIFNRTQSVTEEVINNNKEKKIFPYFSIKD---FVNSLRKPRCILLMVKSGQPTDETIQFILPYLNKGDILIDGGNTFYKDSIRR 111          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia pneumoniae GN=gnd PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.671e-23
Identity = 52/113 (46.02%), Postives = 80/113 (70.80%), Query Frame = 2
Query:  308 VQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            +Q  IGL GLAVMG+NL LN+ + GF +SVYNRT  K  + ++  +   +  L GF   E FV+S+++PR I+++++AG PVDQ+I  L  ++E GD +IDGGN +++++ERR
Sbjct:    1 MQTNIGLIGLAVMGKNLVLNMIDHGFSVSVYNRTPEKTRDFLK--EYPNHRELVGFESLEDFVNSLERPRKIMLMIQAGKPVDQSIHALLPFLEPGDVIIDGGNSYFKDSERR 111          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLTR (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia trachomatis GN=gnd PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.414e-22
Identity = 51/109 (46.79%), Postives = 79/109 (72.48%), Query Frame = 2
Query:  320 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            IGL GLAVMG+NL LN+ + GF +SVYNR+ +K +E ++   + G   L GF   + FV S+++PR I++++KAG PVD+ I +L  ++E+GD +IDGGN +Y ++E+R
Sbjct:    7 IGLIGLAVMGKNLVLNMVDHGFSVSVYNRSPAKTEEFLKDHGESG--ALQGFTTIQEFVQSLKRPRKIMIMIKAGAPVDEMIASLLPFLEEGDILIDGGNSYYLDSEQR 113          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNY3 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803) GN=gnd PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.412e-22
Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-ERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M +R  G+ GLAVMG+NLALN+  +GFPI+V+NR+ +K ++ + ERA  +     Y     E FV  +++PR I+++VKAG PVD  I  L   +E+GD +IDGGN  YE+TERR
Sbjct:    8 MTKRTFGVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFMAERAVGKDIKAAYTV---EEFVQLLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERR 119          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 5.374e-22
Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-ERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M  ++ GL GLAVMG+NLALNI   GF ++VYNRT  K +  + +RA+ +  +P Y   D   FV S+++PR I+++VKAG PVD  ++ L   ++ GD +IDGGN  + +TERR
Sbjct:    1 MALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPAYSLED---FVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERR 112          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_LACLA (6-phosphogluconate dehydrogenase, decarboxylating OS=Lactococcus lactis subsp. lactis GN=gnd PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.374e-22
Identity = 54/114 (47.37%), Postives = 79/114 (69.30%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M Q   G+ G+AVMG+NLALN+  +G+ +++YNRTTSK +E V +  Q+ NL L   +  E FV S++KPR I+++V+AG   D TIK+L   ++KGD +IDGGN  + +T RR
Sbjct:    1 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEE-VYKEHQDKNLVLT--KTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDKGDILIDGGNTHFPDTMRR 111          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_SALTY (6-phosphogluconate dehydrogenase, decarboxylating OS=Salmonella typhimurium GN=gnd PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.564e-21
Identity = 49/114 (42.98%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M +++IG+ G+AVMG+NLALNI  +G+ +SV+NR+  K +E +     +  +P Y  ++   FV S++ PR I+++VKAG   D  I +L  Y+EKGD +IDGGN ++++T RR
Sbjct:    1 MSKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVKE---FVESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGNTFFQDTIRR 111          
The following BLAST results are available for this feature:
BLAST of CN185577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
6PGD2_BACSU2.577e-2448.256-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SCHPO7.499e-2453.706-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLMU7.499e-2448.706-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BUCAP1.279e-2342.986-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLPN1.671e-2346.026-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLTR1.414e-2246.796-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNY32.412e-2247.836-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNE75.374e-2246.096-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_LACLA5.374e-2247.376-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SALTY1.564e-2142.986-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185577 ID=CN185577; Name=CN185577; organism=Citrus sinensis; type=EST; length=648bp
CGTATGAGAACCAAAAAGTTGGCGTATGGGTTGGATTTTGTCCTCTGAGT
CAGAGATCAACTACCGAAGCCACGAAGAGAAACTAAGACAAATAATAATA
ATAAAAGGTTAAAAACAATCCGCAGAGTTTGACCTGTACATTTACAACAA
CTAACAAGGGCTTAAGAGCCAGGCCAATTAATAAATAGACTACATTCAAT
CAAATTGTTTTTTTTTTTCGCAAAACCCAGATGCTCAAATTTCCTAAAGT
CAGTTCATTTTCAAGCATTCTTCGCAGGGTTGAATTTTTCTCAGGTGACT
AAAGATGGTCCAGAGAAGAATTGGCCTAGCTGGCCTTGCTGTCATGGGTC
AAAATCTTGCCCTCAACATTGCTGAGAAAGGATTCCCAATTTCTGTTTAC
AATCGGACGACCTCTAAAGTTGACGAGACTGTTGAACGAGCCAAACAAGA
AGGGAATCTGCCCTTATATGGTTTCCGTGATCCTGAATCCTTTGTTCATT
CAATCCAGAAACCTCGTGTTATAATCATGCTTGTTAAAGCTGGTCCTCCT
GTTGATCAAACAATTAAAACATTGTCTGTTTACATGGAGAAAGGAGATTG
TGTCATTGATGGTGGTAATGAATGGTATGAGAATACCGAGAGGAGACA
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