DC887927

Overview
NameDC887927
Unique NameDC887927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887927_ssr429 microsatellite DC887927_ssr429:429..440. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.758e-43
Identity = 84/110 (76.36%), Postives = 97/110 (88.18%), Query Frame = -2
Query:  160 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 489
            KLWDLSM  S + ++PLHSFTGHTN+KNFVGLSV DGY+ATGSETNEVFVYHKAFPMP +S+ FN+ D +SG E DDA+QFISS+CW GQSS TLVAANS+GNIKILEM+
Sbjct:  736 KLWDLSMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRGQSS-TLVAANSNGNIKILEMM 844          
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.916e-43
Identity = 87/110 (79.09%), Postives = 94/110 (85.45%), Query Frame = -2
Query:  160 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 489
            KLWDLSM  S + +TPLHSF GHTNVKNFVGLSV DGY+ATGSETNEVFVYHKAFPMP LS+ F   DP+S  E DDA+QFISSVCW GQSS TLVAANS+GNIKILEMV
Sbjct:  686 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEMV 794          
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.766e-27
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = -2
Query:  160 KLWDLSMCTSRVIDTPLHSFT--GHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPE-TDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 489
            KLW+L+   S  +     S T  GHTN KNFVGLSV DGY+A GSETNEV+ Y+K+ PMP  S+ F   DP+SG E  DD  QF+SSVCW  + SN LVAANS+GN+K+L++V
Sbjct:  918 KLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQFVSSVCW-RKKSNMLVAANSTGNMKLLKLV 1029          
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 9.690e-26
Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = -2
Query:  160 KLWDLSMCTSRVIDTPLHSFT--GHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPE-TDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 489
            KLWDL   T   + T   S T  GHTN KNFVGLS  DGY+A GSETNEV+ YH++ PMP  S+ F   DP+SG E  +D   F+SSVCW  + SN +V+A+S+G+IK+L++V
Sbjct:  925 KLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCW-RKRSNMVVSASSNGSIKVLQLV 1036          
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.360e-18
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = -2
Query:  169 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKIL 489
            +LWD+        + P+ +F GHTN KNFVGL+V   Y+A GSETNEV+VYHK    P  S  F   D +   E +  + FIS+VCW    S T++ ANS G IK+L
Sbjct:  573 RLWDVKD------NLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPD-MDDAEEEAGSYFISAVCW-KSDSPTMLTANSQGTIKVL 671          
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = -2
Query:  169 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKIL 489
            +LWD+        + P+ +F GH N KNFVGL+V   Y+A GSETNEVFVYHK    P     F   D +   E +  + FIS+VCW      T++ ANS G IK+L
Sbjct:  570 RLWDVKQ------NLPVRTFRGHANEKNFVGLTVRSEYIACGSETNEVFVYHKEISKPLTWHRFGTLD-MEDAEDEAGSYFISAVCW-KSDRPTILTANSQGTIKVL 668          
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: RFWD2_MOUSE (E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.329e-16
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -2
Query:  160 LHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPL--SGPETDDAAQFISSVCWCGQS---SNTLVAANSSGNIKILEMV 441
            L SF GH N KNFVGL+    Y+A GSE N +++Y+K      L+F F+    +     + DD  +F+S+VCW   S   SN L+AANS G IK+LE+V
Sbjct:  635 LRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNVLIAANSQGTIKVLELV 733          
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = -2
Query:  160 LHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPL--SGPETDDAAQFISSVCWCG---QSSNTLVAANSSGNIKILEMV 441
            L SF GH N KNFVGL+    Y+A GSE N +++Y+K      L+F F+    +     + DD  +F+S+VCW       SN L+AANS G IK+LE+V
Sbjct:  633 LRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV 731          
The following BLAST results are available for this feature:
BLAST of DC887927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SPA3_ARATH1.758e-4376.36Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=... [more]
SPA4_ARATH3.916e-4379.09Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=... [more]
SPA1_ARATH1.766e-2756.64Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis th... [more]
SPA2_ARATH9.690e-2653.10Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=... [more]
COP1_ARATH4.360e-1845.79E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
COP1_PEA6.295e-1743.93E3 ubiquitin-protein ligase COP1 OS=Pisum sativum ... [more]
RFWD2_MOUSE5.329e-1644.44E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus ... [more]
RFWD2_HUMAN1.551e-1543.43E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens ... [more]
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Properties
Property NameValue
Genbank descriptionDC887927 EIC Citrus sinensis cDNA clone EIC1127 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887927 ID=DC887927; Name=DC887927; organism=Citrus sinensis; type=EST; length=490bp
TTTTGTTGCGATCCCTATACCCGTAAACCTATATCATTAGCCAAACAAAT
CTTCTTCGGTTTCAGACTCTGTCCTCATTCCGTTTTCATGACCCAATACC
AATATCTTCTATTATCCTTGCTAAAATCAAGAATAATTTGGAGAACACAG
GTAAAATTAAACCATCTCCAAAATTTTTATATTCCCAGAGGAATTTGCAG
CAACTAAAGTGTTGGAGGACTGGCCACACCAACAGACAGATGAGATAAAC
TGCGCAGCATCATCCGTTTCGGGGCCAGACAACGGGTCCGCATGGTTAAA
GTTGAATGATAAAGCTGGCATGGGGAAGGCTTTGTGATACACAAAAACCT
CATTAGTTTCTGAGCCTGTAGCTACGTAACCATCCCATACTGACAAACCG
ACAAAGTTCTTTACATTTGTGTGACCTGTGAATGAATGAAGTGGAGTATC
AATAACCCGAGACGTGCACATTGACAAATCCCAAAGCTTC
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