DC887927
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 1.758e-43 Identity = 84/110 (76.36%), Postives = 97/110 (88.18%), Query Frame = -2 Query: 160 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 489 KLWDLSM S + ++PLHSFTGHTN+KNFVGLSV DGY+ATGSETNEVFVYHKAFPMP +S+ FN+ D +SG E DDA+QFISS+CW GQSS TLVAANS+GNIKILEM+ Sbjct: 736 KLWDLSMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRGQSS-TLVAANSNGNIKILEMM 844
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 3.916e-43 Identity = 87/110 (79.09%), Postives = 94/110 (85.45%), Query Frame = -2 Query: 160 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 489 KLWDLSM S + +TPLHSF GHTNVKNFVGLSV DGY+ATGSETNEVFVYHKAFPMP LS+ F DP+S E DDA+QFISSVCW GQSS TLVAANS+GNIKILEMV Sbjct: 686 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEMV 794
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.766e-27 Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = -2 Query: 160 KLWDLSMCTSRVIDTPLHSFT--GHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPE-TDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 489 KLW+L+ S + S T GHTN KNFVGLSV DGY+A GSETNEV+ Y+K+ PMP S+ F DP+SG E DD QF+SSVCW + SN LVAANS+GN+K+L++V Sbjct: 918 KLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQFVSSVCW-RKKSNMLVAANSTGNMKLLKLV 1029
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 9.690e-26 Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = -2 Query: 160 KLWDLSMCTSRVIDTPLHSFT--GHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPE-TDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 489 KLWDL T + T S T GHTN KNFVGLS DGY+A GSETNEV+ YH++ PMP S+ F DP+SG E +D F+SSVCW + SN +V+A+S+G+IK+L++V Sbjct: 925 KLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCW-RKRSNMVVSASSNGSIKVLQLV 1036
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 4.360e-18 Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = -2 Query: 169 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKIL 489 +LWD+ + P+ +F GHTN KNFVGL+V Y+A GSETNEV+VYHK P S F D + E + + FIS+VCW S T++ ANS G IK+L Sbjct: 573 RLWDVKD------NLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPD-MDDAEEEAGSYFISAVCW-KSDSPTMLTANSQGTIKVL 671
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17 Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = -2 Query: 169 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKIL 489 +LWD+ + P+ +F GH N KNFVGL+V Y+A GSETNEVFVYHK P F D + E + + FIS+VCW T++ ANS G IK+L Sbjct: 570 RLWDVKQ------NLPVRTFRGHANEKNFVGLTVRSEYIACGSETNEVFVYHKEISKPLTWHRFGTLD-MEDAEDEAGSYFISAVCW-KSDRPTILTANSQGTIKVL 668
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: RFWD2_MOUSE (E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 5.329e-16 Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -2 Query: 160 LHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPL--SGPETDDAAQFISSVCWCGQS---SNTLVAANSSGNIKILEMV 441 L SF GH N KNFVGL+ Y+A GSE N +++Y+K L+F F+ + + DD +F+S+VCW S SN L+AANS G IK+LE+V Sbjct: 635 LRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNVLIAANSQGTIKVLELV 733
BLAST of DC887927 vs. ExPASy Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15 Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = -2 Query: 160 LHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPL--SGPETDDAAQFISSVCWCG---QSSNTLVAANSSGNIKILEMV 441 L SF GH N KNFVGL+ Y+A GSE N +++Y+K L+F F+ + + DD +F+S+VCW SN L+AANS G IK+LE+V Sbjct: 633 LRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV 731 The following BLAST results are available for this feature:
BLAST of DC887927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DC887927 ID=DC887927; Name=DC887927; organism=Citrus sinensis; type=EST; length=490bpback to top |