DC887926

Overview
NameDC887926
Unique NameDC887926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2109 contig Csv1_Contig2109:317..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 8.760e-51
Identity = 99/120 (82.50%), Postives = 108/120 (90.00%), Query Frame = -3
Query:  265 HSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 624
            HSTFENVE WL+ELR+HTDPNIVVML+GNKSDLRHLVAV TED KSFAEKESL+FMETSALEATNV+NAFAEVLTQI+ IVSKKAME   +  N  VPSKG+KID+ KDVSAVKKGGCCS
Sbjct:   98 HSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESAN--VPSKGDKIDIGKDVSAVKKGGCCS 215          
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.494e-50
Identity = 95/120 (79.17%), Postives = 111/120 (92.50%), Query Frame = -3
Query:  265 HSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 624
            HSTFENVERWL+ELRDHTDPNIVVML+GNKSDLRHLVAV T++GK+FAE+ESL+FMETSALE+TNV+NAFAEVLTQIYRIVSK+++E G+D G+   P KGEKI++  DVSAVKKGGCCS
Sbjct:   99 HSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSG--PGKGEKINIKDDVSAVKKGGCCS 216          
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.386e-48
Identity = 92/120 (76.67%), Postives = 107/120 (89.17%), Query Frame = -3
Query:  262 STFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCST 621
            +TFEN  RWL+ELRDHTDPNIVVMLIGNKSDLRHLVAV TEDGKSFAE+ESL+FMETSALEATNV+NAF EVLTQIYRIVSK+A+E G+ G +S +PSKG+ I+V +D S +K+ GCCST
Sbjct:   99 ATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218          
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.916e-46
Identity = 93/119 (78.15%), Postives = 109/119 (91.60%), Query Frame = -3
Query:  265 STFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 621
            +TFENV+RWL+EL++HTDPNIVVML+GNKSDLRHL+AV TEDGKS+AE+ESL FMETSALEATNV++AFAEVLTQIYRI SKK +E GED GN++VP KGEKI+V  DVSA+KK GCCS
Sbjct:   99 ATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGED-GNASVP-KGEKIEVKNDVSALKKLGCCS 215          
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.183e-45
Identity = 86/121 (71.07%), Postives = 102/121 (84.30%), Query Frame = -3
Query:  262 HSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCST 624
            H T+ENV RWL+ELRDHTDPNIVVMLIGNKSDLRHLVAVST++ K  AE+E L+FMETSALEATNV+NAF E LTQIYRIVSKKA+E G++G  S+ P KGE I++  + S+ KK GCCS+
Sbjct:   98 HVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218          
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.090e-44
Identity = 87/119 (73.11%), Postives = 103/119 (86.55%), Query Frame = -3
Query:  265 STFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 621
            +TFE   RWL+ELRDHTDPNIVVMLIGNKSDLRHLV VSTEDGK+FAEKESL+FMETSALEATNV+NAF+EVLTQIYRIVSK+A+E G+    S VPS+G+ I+V++D S + +  CCS
Sbjct:   99 TTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCS 217          
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.824e-41
Identity = 85/122 (69.67%), Postives = 105/122 (86.07%), Query Frame = -3
Query:  262 HSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSK-DVSAVKKGGCCST 624
            H TFENVERWL+ELRDHTD NIV+ML+GNK+DLRHL AVSTED K+FAE+E+ FFMETSALE+ NV+NAF EVLT+IY++V +KA+E G+D   +A+P KG+ I+V K DVSAVKK GCCS+
Sbjct:   99 HVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDD--PAALP-KGQTINVGKDDVSAVKKVGCCSS 217          
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.824e-41
Identity = 82/120 (68.33%), Postives = 102/120 (85.00%), Query Frame = -3
Query:  265 HSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 624
            H+TFEN  RWLRELR HTDPNIVVMLIGNK DLRHLVAV TE+ K+FAE+ESL+FMETSAL+ATNV+NAF EVLTQI++IVSK++++ G  G ++ +P KGE I+V +D S +K+ GCCS
Sbjct:   98 HATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGG--GESADLPGKGETINVKEDGSVLKRMGCCS 215          
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.730e-34
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  262 TFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCST 618
            TF+NV+RWLRELRDH D NIV+M+ GNKSDL HL AVS +DG + +EKE L F+ETSALEATN++ AF  +LT+IY IVSKKA+   E    ++VP +G  I+V+ D S   K GCCST
Sbjct:   99 TFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVA-DTSGNTKKGCCST 216          
BLAST of DC887926 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.237e-33
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = -3
Query:  262 TFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCST 618
            TF+NV+RWLRELRDH D NIV+M+ GNKSDL+HL AVS EDG++ AEKE L F+ETSALEA N++ AF  +LT+IY I+SKKA+   E   N  +P +G  I+V+ D SA ++  CCST
Sbjct:   99 TFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSN--LPGQGTTINVA-DASANQRRSCCST 214          
The following BLAST results are available for this feature:
BLAST of DC887926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
RAA1C_ARATH8.760e-5182.50Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RIC2_ORYSJ1.494e-5079.17Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11D_LOTJA2.386e-4876.67Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH2.916e-4678.15Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPT3_NICPL7.183e-4571.07Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11E_LOTJA2.090e-4473.11Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11B_TOBAC2.824e-4169.67Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1A_ARATH2.824e-4168.33Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11C_LOTJA9.730e-3459.66Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU8.237e-3358.82Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887926 EIC Citrus sinensis cDNA clone EIC1126 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887926 ID=DC887926; Name=DC887926; organism=Citrus sinensis; type=EST; length=626bp
TCTCGATAAACAATTTCTCAGTGCAAATTTGTTCCCACTCAATACCTAAG
TATGTAATTCATTGTTCCTACACAAACTCCTAGTCAGCCAGCCAAAAACA
AGAGTCACCGGGAAAAATTTTGAATCTGAAAGAGAAATTAATCACCGCCT
ATCTCCTACTGTAGGCCACTTTTCAGAAAATTTTACACAATAACGGAGAA
GAGAAAACAGACAAAGCCTAACATAGCCGCTTCGTTCCGTTAAAAATATA
TCAACCCACTATGTTGAGCAGCAGCCACCTTTCTTCACAGCAGACACATC
TTTACTGACATCAATTTTCTCTCCCTTGGAAGGTACAGCAGAATTTCCTC
CATCCTCACCTGTCTCCATGGCCTTCTTGCTCACAATACGGTAGATTTGA
GTCAGCACTTCAGCAAATGCATTGTCCACATTAGTAGCCTCCAGAGCAGA
AGTTTCCATGAAGAAGAGAGATTCCTTCTCAGCAAATGATTTCCCGTCCT
CCGTTGAGACAGCCACCAGGTGACGGAGATCCGATTTATTACCAATGAGC
ATAACCACAATGTTGGGATCTGTGTGATCCCTCAACTCCCTTAACCACCT
TTCCACATTTTCAAATGTGGAATGCC
back to top