DC887918

Overview
NameDC887918
Unique NameDC887918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2199 contig Csv1_Contig2199:5..405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887918 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.768e-23
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = -1
Query:   12 VKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAP 275
            +K  + +A    K  +K   +  K+TK    A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT AEKAP
Sbjct:    1 MKGGKSKAKSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAP 85          
BLAST of DC887918 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.921e-23
Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = -1
Query:   12 KDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAP 293
            K K E  +     A  K+ A  KA K + K       A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++DAEKAP
Sbjct:    5 KSKTESKRADPKLAVNKKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAP 93          
BLAST of DC887918 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.093e-20
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = -1
Query:   12 EDRAAGKRKAVLKASKSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAP 263
            E + A  + AV K   ++ K  K     K  KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++ EKAP
Sbjct:    9 ESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAP 94          
BLAST of DC887918 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.687e-20
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = -1
Query:   12 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAP 326
            MK  + KGA K D    VK                SK + K  K  K  A KDPNKPKR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++++KAP
Sbjct:    1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAP 90          
BLAST of DC887918 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.135e-19
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = -1
Query:   12 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAP 326
            MK  + KGA K D    VK     + G  K   K  K           A KDPNKPKR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL+++EKAP
Sbjct:    1 MKGAKSKGAAKADAKLAVK-----SKGAEKPAAKGKKGK---------AGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAP 91          
The following BLAST results are available for this feature:
BLAST of DC887918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_IPONI3.768e-2357.95HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN4.921e-2358.51HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA5.093e-2055.81HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE8.687e-2049.06DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT1.135e-1949.52HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionDC887918 EIC Citrus sinensis cDNA clone EIC1105 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887918 ID=DC887918; Name=DC887918; organism=Citrus sinensis; type=EST; length=401bp
GNTTTGCTTCATGGGGCTTTTTCTGCATCAGTCAGCGACTTCCATTTCTC
TCCCCCAGCTTTCCCCACAGCTGAGACAGCTTTAACATTGGGATGCTCTT
GTTTGTAAACCTTTCTGAACTCTTCTAGGAAAACAAAAAAAGCACTAGGA
GGCCTCTTCGGCTTGTTAGGGTCTTTCTTTGCTGACTTGACATTCTTGGT
GCGCTTGTTGCTACTCTTACTAGCTTTAAGCACAGCCTTTCGCTTTCCTG
CAGCTCTGTCCTCAACAGGCTTCACTACTTCATTTTTGTCCTTCTTGACT
GCTCCTTTGCCCCTGGTAACCTTCATTTTCAGAAGCGATATGCCTGGACG
TAGAGAAGAGAGGCGAAGAACACAAAAGCAGAGCCGAAAAACAGGGCGCT
T
back to top