CN185531

Overview
NameCN185531
Unique NameCN185531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185531 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = -2
Query:  422 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGGS 652
            DPNNTT+F+GGL   VT+D L+  F  +G +V+VKIP GK CGFVQ+ +R  AE A++ + G  +    +RLSWG S
Sbjct:  309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of CN185531 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = -2
Query:  428 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 652
            D  N+T+FVGGL   V+++ LK +F  +GE+V+VKIP GK CGFVQF NR  AE A++ L G  LG   IRLSWG
Sbjct:  299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWG 373          
BLAST of CN185531 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  347 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGGSPSNKQSDQAQWNGGGYYGFAQGYEA 652
            DP NTT+FVGGL P  T+  L+++F  +G +++V+IP GK CGFV+F  R  AE ++  L G  +GG  IRLSWG   S+     +   G   Y  + G  A
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457          
BLAST of CN185531 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 33/75 (44.00%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  428 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWG 652
            DP NTT+FVGGL  ++++  L+  F  +G ++++KIP GK CGFVQ++ ++ AE+A++ + G  +G   IRL+WG
Sbjct:  293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWG 367          
The following BLAST results are available for this feature:
BLAST of CN185531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NAM8_YEAST6.140e-1750.65Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
YG41_SCHPO8.019e-1756.00Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
NGR1_YEAST1.047e-1642.16Negative growth regulatory protein NGR1 OS=Sacchar... [more]
CSX1_SCHPO2.184e-1444.00RNA-binding post-transcriptional regulator csx1 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185531 ID=CN185531; Name=CN185531; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTCAAGTTCGAAAATACTGCCCTTTTTAGTCTGCA
TGCTACAACCAATCCCATAAATAAATGCTTCAAATACACAACATTGCAGA
TACTAAATAAAAAGAGAAAAAAAAAATCAATAAACTATCTCCAAGCACTC
ACATCATCCTCAACAACCAAACAACAAATACCTTCCTAAAATTCAGTTTG
ATTATGGCTACCCCAGCTTCAAGACTTGCACCATAAATACATCACTGCTG
TGGCTGTTGGTAAGACCCTGGCTGTTGGTAAGTCCCATATCCAGGAAAGC
CCCCATAGTACATGTTCGGGTCTTGGGTAGGAGGCGCATATCCATATGCC
TCGTATCCTTGTGCAAAACCATAGTATCCACCACCGTTCCATTGGGCCTG
ATCCGACTGTTTGTTTGAAGGACTACCCCCCCATGACAGTCTAATGCTTT
GTCCTCCTAATTGGGTGCCATTCAAAACTGATAGTGCTTGCTCCGCACAA
GTTCTGTTAGCAAACTGAACAAACCCGCAGCGCTTGCCCGCTGGTATTTT
CACATGAACTAACTCACCATATTGACCAAAAACTGTTTTCAAAATGTCAT
CTGTAACACTAGGATCCAAACCCCCAACAAATATTGTTGTATTATTTGGA
TCATTCCCGCCCTGGCTTCCTTGGGTATTTTGAAAAGTAGCTTTCTGATA
TTGCTGG
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