CN185468

Overview
NameCN185468
Unique NameCN185468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9_BOVIN (Transcription initiation factor TFIID subunit 9 OS=Bos taurus GN=TAF9 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.247e-31
Identity = 63/129 (48.84%), Postives = 92/129 (71.32%), Query Frame = 2
Query:   80 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL-SLPKKQSA 463
            + +P+DA+++  +LK MG+ EYEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DD++LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L SL KK SA
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASA 138          
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9_HUMAN (Transcription initiation factor TFIID subunit 9 OS=Homo sapiens GN=TAF9 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.527e-30
Identity = 62/128 (48.44%), Postives = 91/128 (71.09%), Query Frame = 2
Query:   80 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL-SLPKKQS 460
            + +P+DA+++  +LK MG+ EYEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DD++LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L SL KK S
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAS 137          
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9_MOUSE (Transcription initiation factor TFIID subunit 9 OS=Mus musculus GN=Taf9 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.994e-30
Identity = 62/129 (48.06%), Postives = 91/129 (70.54%), Query Frame = 2
Query:   80 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL-SLPKKQSA 463
            + +P+DA+++  +LK MG+ EYEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DD++LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L SL KK  A
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAPA 138          
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9_RAT (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus GN=Taf9 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.441e-30
Identity = 61/126 (48.41%), Postives = 90/126 (71.43%), Query Frame = 2
Query:   80 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL-SLPKK 454
            + +P+DA+++  +LK MG+ EYEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DD++LA+Q + + SF+ PP R+ LL++A+ RN+ PLP      G  LPP++  L +PNY+L SL KK
Sbjct:   10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKK 135          
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9B_MOUSE (Transcription initiation factor TFIID subunit 9B OS=Mus musculus GN=Taf9b PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.292e-29
Identity = 61/126 (48.41%), Postives = 89/126 (70.63%), Query Frame = 2
Query:   80 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL-SLPKK 454
            ++ PRDA ++  +LK MG+ EYEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DD++LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L SL KK
Sbjct:   10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLVKK 135          
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9B_RAT (Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus GN=Taf9b PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.879e-29
Identity = 60/126 (47.62%), Postives = 89/126 (70.63%), Query Frame = 2
Query:   80 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL-SLPKK 454
            ++ PRDA ++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K T+D DD++LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L SL KK
Sbjct:   10 KNAPRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLVKK 135          
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9B_PONAB (Transcription initiation factor TFIID subunit 9B OS=Pongo abelii GN=TAF9B PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.413e-29
Identity = 60/126 (47.62%), Postives = 88/126 (69.84%), Query Frame = 2
Query:   80 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL-SLPKK 454
            ++ PRDA ++  +LK MG+ EYEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DD++LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L SL KK
Sbjct:   10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK 135          
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9B_HUMAN (Transcription initiation factor TFIID subunit 9B OS=Homo sapiens GN=TAF9B PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.413e-29
Identity = 60/126 (47.62%), Postives = 88/126 (69.84%), Query Frame = 2
Query:   80 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL-SLPKK 454
            ++ PRDA ++  +LK MG+ EYEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DD++LA+Q + + SF+ PP R+ LL++A+ +N+ PLP      G  LPP++  L +PNY+L SL KK
Sbjct:   10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK 135          
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9_DROME (Transcription initiation factor TFIID subunit 9 OS=Drosophila melanogaster GN=e(y)1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.522e-25
Identity = 57/128 (44.53%), Postives = 86/128 (67.19%), Query Frame = 2
Query:   86 LPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL---SLPKKQS 460
            +P+DA+++ S+LK + V+EYEPRV++Q LE  +RYV  +L DA+VY+ HA K TID DD++LA +  ++ SF+ P  R VL ++A  RN +PLP      G+ LPP++  L   NY+L   + PKK +
Sbjct:   18 VPKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKKMT 145          
BLAST of CN185468 vs. ExPASy Swiss-Prot
Match: TAF9_ENCCU (Transcription initiation factor TFIID subunit 9 OS=Encephalitozoon cuniculi GN=TAF9 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.970e-23
Identity = 53/125 (42.40%), Postives = 78/125 (62.40%), Query Frame = 2
Query:   65 MAEGDEDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL 439
            MA G+   PRDAK++  +L+S+G+EE EP+VI Q LE  YRY  DVL DA ++++H G+T I   D+KLA+Q+KV   F  PP R+ L E++   N  PL        I +PP    L++ +Y++
Sbjct:    1 MASGENLAPRDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKHTGRTHITTSDVKLALQTKVGRHFVPPPPRQYLSEISTMVNSKPLTIPDGENLIRVPPSSSALLNLDYEV 125          
The following BLAST results are available for this feature:
BLAST of CN185468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TAF9_BOVIN5.247e-3148.84Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9_HUMAN1.527e-3048.44Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9_MOUSE1.994e-3048.06Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9_RAT4.441e-3048.41Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9B_MOUSE1.292e-2948.41Transcription initiation factor TFIID subunit 9B O... [more]
TAF9B_RAT2.879e-2947.62Transcription initiation factor TFIID subunit 9B O... [more]
TAF9B_PONAB6.413e-2947.62Transcription initiation factor TFIID subunit 9B O... [more]
TAF9B_HUMAN6.413e-2947.62Transcription initiation factor TFIID subunit 9B O... [more]
TAF9_DROME2.522e-2544.53Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9_ENCCU8.970e-2342.40Transcription initiation factor TFIID subunit 9 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185468 ID=CN185468; Name=CN185468; organism=Citrus sinensis; type=EST; length=470bp
CGACGACGGTGTGGATTTGCCACGACTGTTTACACTTTACACCAGAAGGG
ATCCAGGTGAGGAAATGGCGGAGGGAGACGAGGACTTGCCAAGAGATGCA
AAGATTGTAAAATCGCTGCTGAAATCAATGGGGGTGGAGGAATATGAGCC
TCGAGTCATACACCAGTTCCTGGAAGTGTGGTACCGATACGTTGTTGATG
TACTGACGGATGCACAGGTCTATTCAGAGCATGCTGGCAAAACTACCATT
GATTGTGACGATATCAAGCTTGCCGTCCAGTCAAAAGTCAATTCCAGCTT
CTCACAACCCCCTGCAAGAGAGGTGCTACTAGAGTTGGCTAAGAACAGGA
ACAAGATTCCCTTGCCAAAGTCAATATCAGCGCCTGGTATCCCACTTCCA
CCTGAGCAGGACACATTGATTAGCCCTAACTACCAACTGTCGCTTCCAAA
GAAGCAATCTGCTCGGGAAG
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