DC887882 | Citrus Genome Database

Overview


Name	DC887882
Unique Name	DC887882
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	459

Libraries


Library Name	Type
EIC	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9834	contig	Csv1_Contig9834:271..729.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = -2

Query:  204 MARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 434
            MA ++ D +   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MAZZLTD-EQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_MEDSA (Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = -2

Query:  204 MARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 434
            MA ++ D +   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-EQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_LILLO (Calmodulin OS=Lilium longiflorum PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -2

Query:  204 MARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 434
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -2

Query:  204 MARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 434
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_HELAN (Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = -2

Query:  204 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 410
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_EUPCH (Calmodulin OS=Euphorbia characias PE=2 SV=4)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -2

Query:  204 MARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 434
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM_BRYDI (Calmodulin OS=Bryonia dioica PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -2

Query:  204 MARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 434
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM7_ARATH (Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -2

Query:  204 MARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 434
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM2_SOYBN (Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -2

Query:  204 MARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 434
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DC887882 vs. ExPASy Swiss-Prot
Match: CALM1_PETHY (Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.932e-41
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = -2

Query:  204 FPEFLNLMARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 455
            FPEFLNLMARKMKD DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -2

Query:  204 MARKMKDXDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 434
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

The following BLAST results are available for this feature:

BLAST of DC887882 vs. ExPASy Swiss-Prot

BLAST of DC887882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309


Match Name	E-value	Identity	Description
CALM_SPIOL	3.932e-41	98.81	Calmodulin OS=Spinacia oleracea PE=1 SV=2	[more]
CALM_MEDSA	3.932e-41	98.81	Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2	[more]
CALM_LILLO	3.932e-41	98.81	Calmodulin OS=Lilium longiflorum PE=2 SV=2	[more]
CALM_HORVU	3.932e-41	98.81	Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2	[more]
CALM_HELAN	3.932e-41	98.81	Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3	[more]
CALM_EUPCH	3.932e-41	98.81	Calmodulin OS=Euphorbia characias PE=2 SV=4	[more]
CALM_BRYDI	3.932e-41	98.81	Calmodulin OS=Bryonia dioica PE=2 SV=2	[more]
CALM7_ARATH	3.932e-41	98.81	Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 ...	[more]
CALM2_SOYBN	3.932e-41	98.81	Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2	[more]
CALM1_PETHY	3.932e-41	98.81	Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	DC887882 EIC Citrus sinensis cDNA clone EIC1045 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC887882 ID=DC887882; Name=DC887882; organism=Citrus sinensis; type=EST; length=459bp
GAGCGGAAAAAAACTAAAACATTAAAAAACTGAAAAGTTGCTCCAGTCAC
AAGACAAATTGAAGCAGGAGACAACATGCTTCCTTTAGCTTGACCTCAGA
GTTATCAAATTAAAATTTATAAAAAAGGAAACTAGGGAACCAATTATATT
AATCAACCAATTTCTTCTTTTCCCAGGAAGTTTTGGTTGGGTGGAGTCAC
TTACTTAGCCATCATAACCTTGACAAATTCCTCGTAATTTATCTGGCCAT
CACCATCGACATCAGCTTCCCTTATCATCTCATCGACTTCCTCATCAGTA
AGCTTCTCCCCTAGGTTTGTCATCACATGGCGCAGCTCAGCAGCTGAGAT
GAAACCATTCTGATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCT
CCTCAGAGTCGGNATCCTTCATCTTCCTGGCCATGAGGTTTAGGAATTCA
GGAAAAGCA