DC887876

Overview
NameDC887876
Unique NameDC887876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13463 contig Csv1_Contig13463:140..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887876 vs. ExPASy Swiss-Prot
Match: Y2992_ARATH (Uncharacterized protein At2g39920 OS=Arabidopsis thaliana GN=At2g39920 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = -3 
Query:  319 YIECIEEAKHXKHIFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQ--SLGKRVFKLPNPLY 669
            Y++ IEEAKH K I  L L+ KL+ +G+ ++LLSR+ E +RNAT E L S GY  WS LIM  ++  Q +  E            G  + G+I N MD L GQ     KR+FKLP+  Y
Sbjct:  167 YMKYIEEAKHQKSILILALYSKLRSQGYSMVLLSRRPETERNATIEQLKSRGYSDWSHLIMSREDTRQKEELE-----------RGHRVIGVIGNHMDVLRGQWNWQSKRLFKLPSLTY 274
[Close]
BLAST of DC887876 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = -3 
Query:  316 TLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQSLGKRVFKLPNPLYY 624
            +LKL+ ++   G+ V LL+ + E  R+ T E L++AG+  W  LI+R  ++    +  Y S RR  + +EGF I G   +Q   L+G S+  R FKLPNP+YY
Sbjct:  151 SLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYY 253
The following BLAST results are available for this feature:
BLAST of DC887876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2992_ARATH3.109e-1642.86Uncharacterized protein At2g39920 OS=Arabidopsis t... [more]
PPA1_SOLLC1.306e-1438.83Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
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Properties
Property NameValue
Genbank descriptionDC887876 EIC Citrus sinensis cDNA clone EIC1035 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887876 ID=DC887876; Name=DC887876; organism=Citrus sinensis; type=EST; length=719bp
GATCACTGGTACTCAGAAACTCTTCTATTTGTAATTATATATACAACAGT
AAATTCAGGGGACTCATCACTCACTACCTCAGCCTAGTTGCAAACTGCGA
TGGCTACTCAGGGTACTCATCACTCATTGCCTCAGCCTAGTAACAAACTG
CGATGGAGATCATTAAATAGTCAATGCACAAAGAAGATATCAGTGGTGCC
GATACCACTCTGGAAAATCATCAACAATGACAAAGAAGGAATCAATAGCG
CGCACGCCACCAAGGAACATCAGCTACGATGGAAATTTTGTACTTTCAAT
GTGATGATCAAAACTGTAATATAAAGGGTTAGGAAGCTTAAAAACACGCT
TCCCTAAACTTTGACCTATTAAAGCATCCATCTGGTTGCTAATCAAACCA
GTTATGTGGAAGCCCTCTTTCTGCAATATCGTCCTTCGTCTAGACAAGTA
TTCGCGGCTATCCATTTGCATTTCATTGTCCAGCCTCATAATCAATGAAG
ACCAACCCCTGTAACCAGCTGAAATAAGGAGCTCTGTGGTGGCATTTCTT
TGTCCCTCATGCTTTCTAGATAAAAGTATCACAGGCCATCCCCTGACTTG
AAGTTTCATGAATAGTTTCAATGTAAAAATGTGCTTCANATGTTTGGCCT
CTTCAATGCACTCAATATACCCACGTACATTAACTCTGTCTATTAATGGA
TTACTGTACTTGGAACTTG
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