DC887869

Overview
NameDC887869
Unique NameDC887869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11296 contig Csv1_Contig11296:745..1371. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887869 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.416e-40
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = -3
Query:  310 GRKRSGGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYN 585
            G+KR  G APYRIFNLGNTSPVTVP LV+ILE+HLKVKAK+N +EMPGNGDVPFTHANISSA+ EFGY+PTTDL+TGLKKFVRWYLSYYGYN
Sbjct:  333 GKKR--GAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYYGYN 422          
BLAST of DC887869 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.379e-34
Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = -3
Query:  319 GRKRSGGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 585
            G+KR  GPA  R+FNLGNTSPV V  LV ILER LKVKAKKN+I+MP NGDVPFTHANIS AQ+E GY+PTTDLQTGLKKFVRWYLSYY
Sbjct:  342 GKKR--GPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 428          
BLAST of DC887869 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.087e-32
Identity = 70/97 (72.16%), Postives = 82/97 (84.54%), Query Frame = -3
Query:  295 GRKRSGGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKRV 585
            G+KR  G A  R+FNLGNTSPV V  LV+ILER LKVKAK+N++++P NGDVPFTHANISSAQ+EFGY+P+TDLQTGLKKFVRWYL YY    GK+V
Sbjct:  337 GKKR--GAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYYKQG-GKKV 430          
BLAST of DC887869 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = -3
Query:  298 GRKRSGGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKR 585
            G+KR  G A  R+FNLGNTSPV V  LV ILER LKVKAK+N++++P NGDV FTHANISSAQ+E GY+PTTDLQTGLKKF RWYL Y  YN GK+
Sbjct:  336 GKKR--GAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY--YNGGKK 427          
BLAST of DC887869 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.053e-27
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = -3
Query:  316 GRKRSGGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 585
            G+KR  G A  R++NLGNTSPV V +LV+ILE  L  KAKK++I+MP NGDVP+THAN+S A K+FGY+PTTDL  GL+KFV+WY+ YYG
Sbjct:  357 GKKR--GQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYG 444          
BLAST of DC887869 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.053e-27
Identity = 58/95 (61.05%), Postives = 75/95 (78.95%), Query Frame = -3
Query:  301 GRKRSGGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGK 585
            G+K+  GPA +RI+NLGNTSPV V KLV ILE+ LK+KAKK ++ +P NGDV FTHANI+ AQ E GY+P  DL+TGLKKFV+WY+ +Y  ++ K
Sbjct:  341 GKKK--GPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGFYTGSKKK 433          
BLAST of DC887869 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = -3
Query:  319 APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 561
            APY+++N+GN SPV + + V  +E  L  +A+KN +++   GDVP T+AN+    ++  ++P T +Q G+ KFV WYL YY
Sbjct:  253 APYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQP-GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332          
BLAST of DC887869 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = -3
Query:  328 YRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 555
            Y IFNLGN+ PV +   + ++E++L  KAKK  + M  +GDV  T+A++S ++K  GY+P   ++ GLK+F  W+L
Sbjct:  243 YEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQ-DGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFCNWFL 317          
BLAST of DC887869 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = -3
Query:  319 APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 561
            APYR++N+GN+SPV +   +  LE  L ++AKKN++ +   GDV  T A+  +  +  G+ P T ++ G+K FV WY  +Y
Sbjct:  253 APYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ-PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332          
The following BLAST results are available for this feature:
BLAST of DC887869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GAE1_ARATH1.416e-4084.78UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE4_ARATH3.379e-3479.78UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE2_ARATH1.087e-3272.16UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE3_ARATH2.050e-3170.83UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE6_ARATH1.053e-2764.44UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
GAE5_ARATH1.053e-2761.05UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
CAPI_STAAU2.974e-1441.98Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
Y1055_METJA4.748e-1242.11Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
YCL2_ECO113.078e-1139.51Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
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Properties
Property NameValue
Genbank descriptionDC887869 EIC Citrus sinensis cDNA clone EIC1023 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887869 ID=DC887869; Name=DC887869; organism=Citrus sinensis; type=EST; length=629bp
CTTTACTTACACAAAAGAAATGGAACAAAGTGAAGAAAACAAAAACAAAG
AAACTACAGAGGGATGAAGATGAACCACATTTTACCATTCCCCCAAAGAA
AAGAATAATTGTGTCACTTTTTTTCTTTTTTCTTTTTTCACCTTACAACG
TTTTCTGTTCCTTTCGTTTTTTTTAAGGAAAAAAACAAAAAAAAAAAACC
CTCTAATCCCGCACCTCCCACGGCGCGAAAACCCAAAAAAAAAAGAAAAA
AAGAAGGTAAAACGCAAAAAACATAAAGGAAAAAAAAATTAATTTACACG
TTTGCCACGATTATAGCCGTAATATGAGAGATACCATCTAACAAATTTTT
TCAAGCCGGTTTGCAAATCCGTCGTGGGCCTGTACCCGAACTCCTTCTGG
GCCGAACTGATATTCGCATGCGTGAACGGGACGTCGCCGTTTCCAGGCAT
TTCGATTACATTCTTCTTGGCTTTTACCTTCAGGTGTCTCTCCAATATAT
TCACCAGCTTAGGTACCGTGACCGGTGACGTGTTCCCCAAATTAAAGATC
CGGTACGGTGCTGGGCCCCCGCTTCTTTTCCGCCCGACCCGGTACTCTTA
CCCGAGGTATCCAGCGAACCTAAACAACC
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