DC887868

Overview
NameDC887868
Unique NameDC887868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2436 contig Csv1_Contig2436:807..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
[Close]
BLAST of DC887868 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.172e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3 
Query:  130 SSDTXDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 273
            SSDT DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:   19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
The following BLAST results are available for this feature:
BLAST of DC887868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_WHEAT5.172e-2097.92Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN5.172e-2097.92Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU5.172e-2097.92Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC5.172e-2097.92Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR5.172e-2097.92Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA5.172e-2097.92Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ5.172e-2097.92Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY5.172e-2097.92Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE5.172e-2097.92Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO5.172e-2097.92Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887868 EIC Citrus sinensis cDNA clone EIC1022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887868 ID=DC887868; Name=DC887868; organism=Citrus sinensis; type=EST; length=335bp
AAGACAATATTATCAATGATAACTAGTCTTCTTCAAGAAGACAAGACAAC
ATAGCGACCAGCTTGAACAGAAAATACATTGACACGTCCCTCAGAAACCA
CCACCACGGAGACGGAGGACGAGATGAAGAGTGGACTCCTTCTGAATGTT
GTAATCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGA
GCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCCTTG
ACATTGTCNATGGTATCCGAACTCTCCACCTCCAGGGTAACCGTCTTCCC
GGTCAATGTCTTGACNAAAATCTGCATGCCACCCC
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