DC887865

Overview
NameDC887865
Unique NameDC887865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887865_ssr15 microsatellite DC887865_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2478 contig Csv1_Contig2478:57..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.443e-43
Identity = 92/128 (71.88%), Postives = 102/128 (79.69%), Query Frame = -2
Query:  210 MTGEAVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 593
            MT   VN KAYPLAD+ LT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  E SQLK QIQ L+ +IE+LL+
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQQSIERLLV 128          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.443e-43
Identity = 92/128 (71.88%), Postives = 102/128 (79.69%), Query Frame = -2
Query:  210 MTGEAVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 593
            MT   VN KAYPLAD+ LT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ AIE+LL+
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQQAIERLLV 128          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 171.4 bits (433), Expect = 3.807e-42
Identity = 90/128 (70.31%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  210 MTGEAVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 593
            MT   VN KAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 171.4 bits (433), Expect = 3.807e-42
Identity = 90/128 (70.31%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  210 MTGEAVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 593
            MT   VN KAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.807e-42
Identity = 90/128 (70.31%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  210 MTGEAVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 593
            MT   VN KAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.807e-42
Identity = 90/128 (70.31%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  210 MTGEAVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 593
            MT   VN KAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.807e-42
Identity = 89/128 (69.53%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  210 MTGEAVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 593
            M  + VN KA+PLAD+NL+  ++DLVQQA NYKQLKKGANEATKTLNRGISE IVMAAD            L EDKNVPYVFV SK ALGRACGVTRPVIA S+T NE SQLK+QIQ++K+ +EKLLI
Sbjct:    1 MADDGVNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLLI 128          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.807e-42
Identity = 90/128 (70.31%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  210 MTGEAVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 593
            MT   VN KAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.481e-42
Identity = 91/124 (73.39%), Postives = 101/124 (81.45%), Query Frame = -2
Query:  210 AVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 581
            +VN KA+PLADS LT  ILDLVQQA++YKQL+KGANEATKTLNRGISEFIVMAADT           L EDKNVPYVFVPSK ALGRACGV+RPVI+ S+T+NEAS L  QIQ +K AIEKLLI
Sbjct:    2 SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125          
BLAST of DC887865 vs. ExPASy Swiss-Prot
Match: SNU13_CANAL (13 kDa ribonucleoprotein-associated protein OS=Candida albicans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.654e-40
Identity = 88/124 (70.97%), Postives = 97/124 (78.23%), Query Frame = -2
Query:  210 AVNXKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 581
            A N KA+PLADS LT  ILD+VQQ+ N +QLKKGANEATKTLNRGISEFI+MAADT           L EDKNVPYVFVPSK ALGRACGV+RPVIA SVTSN+AS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVIAASVTSNDASSIKNQIYGIKDKIETLLI 126          
The following BLAST results are available for this feature:
BLAST of DC887865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
NH2L1_XENTR3.443e-4371.88NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
NH2L1_XENLA3.443e-4371.88NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE... [more]
NH2L1_RAT3.807e-4270.31NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1... [more]
NH2L1_MOUSE3.807e-4270.31NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2... [more]
NH2L1_MACFA3.807e-4270.31NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2... [more]
NH2L1_HUMAN3.807e-4270.31NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1... [more]
NH2L1_CAEEL3.807e-4269.53NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
NH2L1_BOVIN3.807e-4270.31NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S... [more]
SNU13_SCHPO8.481e-4273.3913 kDa ribonucleoprotein-associated protein OS=Sch... [more]
SNU13_CANAL4.654e-4070.9713 kDa ribonucleoprotein-associated protein OS=Can... [more]

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Properties
Property NameValue
Genbank descriptionDC887865 EIC Citrus sinensis cDNA clone EIC1017 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887865 ID=DC887865; Name=DC887865; organism=Citrus sinensis; type=EST; length=672bp
CATTGTTTGTAGCATCATTCATTCATTGCAGGTTCTGGTAAATATGATTC
CAAAAGCTTTCCCATAATGCATGACAAGAAAACATAAAAGACAAAAATAC
AAAGATTAATAATAGAAGATTTCCAAGCAGCACAACTACACCATCAGTCA
AAGCCTCTAACCACCATCAAAGAGGCCCATCACACCGAATATGAATCCCA
TTATATTCATATCAAGAGCTTCTCAATGGCATCCTTCAGCTGTTGAATTT
GAGTCTTCAACTGACTCGCCTCATTTGAGGTCACAGAGCAAGCAATGACA
GGTCTTGTGACCCCACATGCCCTGCCAAGAGCCTGCTTTGAAGGGACAAA
AACATAGGGAACATTCTTGTCCTCTGCAAGCAGTGGAAGATGAAGAAGAA
TCTCCAGAGGCTCGGTATCAGCAGCCATCACAATAAACTCGGAGATACCT
CTGTTAAGAGTCTTAGTAGCTTCATTGGCGCCCTTTTTGAGCTGCTTGTA
ATTGGCAGCTTGCTGAACGAGATCCAGTATCGTGATTGTGAGATTAGAAT
CTGCTAGCGGGTAAGCTTTANGGTTCACTGCTTCTCCTGTCATTTTCGTG
GTGGCGGGGGACGGAGGCTAAGGGTTTTTGTGGCAGCTAATGAAGCGTAC
AAAGGTCCCAGGGGTTTAAGCC
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