CN185435

Overview
NameCN185435
Unique NameCN185435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.094e-83
Identity = 152/224 (67.86%), Postives = 177/224 (79.02%), Query Frame = 3
Query:  111 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSHTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEE--PSVP 776
            ++DNLTDKN+VFRKLK+KSENK+CFDC+AKNPTWASVTYGIFLCIDCSA HR+LGVHISFVRSTNLDSWS EQL+ M++GGNNRAQVFFKQHGWTDGGKIEAKYTSRAA+LY+QILAKEVAK++AEE                     V      +E    + E   A  SPK S+TV+ ST KKP+GAK++GKTGGLGARKLT+KP ++LYEQKPEE  P +P
Sbjct:    5 SADNLTDKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVSSYSVKEELPLSKHEATSATSSPKASNTVVPSTFKKPIGAKRTGKTGGLGARKLTTKPKDNLYEQKPEEVAPVIP 228          
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.270e-80
Identity = 158/221 (71.49%), Postives = 177/221 (80.09%), Query Frame = 3
Query:  108 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKE-NYQGRQETQD-APGSPKVSHTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEE 764
            MAS+NL DK  VF+KLKAKS+NK+CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS+EQLKMM+YGGNNRAQVFFKQ+GW+DGGK EAKYTSRAA+LYKQILAKEVAKS AEE  L               L  +K  +A KE N   +QE  D  P SP++S      +VKKPLGAKK+GKTGGLGARKLT+K S +LY+QKPEE
Sbjct:    1 MASENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKAEEE-LDLPPSPPDSTQVPNGLSSIKTSEALKESNTLKQQEKPDVVPVSPRISR-----SVKKPLGAKKTGKTGGLGARKLTTKSSGTLYDQKPEE 215          
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.404e-79
Identity = 151/224 (67.41%), Postives = 177/224 (79.02%), Query Frame = 3
Query:  108 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSHTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEPSVPI 779
            MA++NLTDKN+VFRKLK+KSENK+CFDC+AKNPTWASV YGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS EQL+ M++GGNNRAQVFFKQHGW DGGKIEAKYTSRAA++Y+Q LAKEVAK+MAEE  L                 +    ++PKE+    ++      SPK S  V+ ST KKPL ++KSGKTGGLGARKLT+K  ++LYEQKPEEP VP+
Sbjct:    1 MATENLTDKNVVFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWNDGGKIEAKYTSRAADMYRQTLAKEVAKAMAEETVLPSLSSVATSQPVESS-ENGFTSESPKES--SLKQEAAVVSSPKASQKVVASTFKKPLVSRKSGKTGGLGARKLTTKSKDNLYEQKPEEP-VPV 220          
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: ARFG2_HUMAN (ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.773e-35
Identity = 92/246 (37.40%), Postives = 127/246 (51.63%), Query Frame = 3
Query:  111 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMA----------------------EEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPG------SPKVSHTVLTSTV--KKPLGAKKS-GKTGGLGARKLTSKPSESLYEQ 752
            A  N T+   +F++L+A   NK CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS W+  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y++ + +  + ++A                      +++                  P    Q AP     G  + +  P       SPK S  + +S +  KKP  AKK  G   GLGA+K++S+    +  Q
Sbjct:    3 AEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYREKIRQLGSAALARHGTDLWIDNMSSAVPNHSPEKKDSDFFTEHTQPPAWDAPATEPSGTQQPAPSTESSGLAQPEHGPNTDLLGTSPKASLELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSSQSFSEIERQ 247          
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: ARFG2_BOVIN (ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.067e-35
Identity = 95/245 (38.78%), Postives = 126/245 (51.43%), Query Frame = 3
Query:  111 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMA-------------------EEAGLXXXXXXXXXXXXXXXLPDVK--IQDAPKENYQGRQETQDAPG------SPKVSHTVLTSTV--KKPLGAKKS-GKTGGLGARKLTSKPSESLYEQ 752
            A  N T+    F++L+A   NK CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y++ + +  + ++A                   E+                  + D+    Q AP     G  + +  P       SPK S    TS +  KKP  AKK  G   GLGA+K++S+    +  Q
Sbjct:    3 AEPNKTEIQTFFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSTWSWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYREKIRQLGSAALARHGTDLWTDSVSTAPSHSPEKKESDFFLEHTQPPAWNAPVTDLSETQQPAPSAESSGLAQPEHGPNMDLLGTSPKASLEPKTSLIGKKKPAAAKKGLGAKKGLGAQKVSSQSFSEIERQ 246          
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: ARFG2_PONAB (ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.288e-32
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  111 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ 452
            A  N T+   +F++L+A   NK CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS W+  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y++
Sbjct:    3 AEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYRE 116          
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: ARFG2_MOUSE (ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus GN=Arfgap2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.869e-32
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  111 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ 452
            AS + T+   +F++L+A   NK CFDC AK+P+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF+QHG         KYTSRAA++Y++
Sbjct:    3 ASPSKTEIQTIFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWLQLRCMQVGGNANATAFFRQHGCM-ANDANTKYTSRAAQMYRE 116          
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: ARFG2_XENTR (ADP-ribosylation factor GTPase-activating protein 2 OS=Xenopus tropicalis GN=arfgap2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.747e-32
Identity = 85/209 (40.67%), Postives = 114/209 (54.55%), Query Frame = 3
Query:  141 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSHTV--LTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKP 758
            VF++L+A   NK CFDC AKNP+WAS+ YG+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG T      AKY SR+A++Y++ + +++A +   + G                  + K  D   E  Q     +  P S   S TV  +T T+  P  A  +    G     L++ P  ++ E KP
Sbjct:   13 VFKRLRAAPTNKSCFDCGAKNPSWASIPYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASANAFFHQHGATT-SDTNAKYNSRSAQMYREKI-RQLANAAMSKHGTDLWIDGMNCALVQP--AEKKESDFFAEMTQPSSSWEATPASEPTSTTVTTVTRTISSPETADSASAECGPSVDILSTSPKAAV-EVKP 216          
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.392e-32
Identity = 87/215 (40.47%), Postives = 114/215 (53.02%), Query Frame = 3
Query:  108 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSHTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYE 749
            M   +  D   +F++L++   NK+CFDC AKNP+WAS+TYG+FLCIDCS  HRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG +      AKY SRAA+LY     +E  KS+A +A                 L        PKE     ++   +  SP+VS T   S + +P                LTS+P+E+  E
Sbjct:    1 MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCST-NDTNAKYNSRAAQLY-----REKIKSLASQATRKHGTDLWLDSCVVPPL-----SPPPKE-----EDFFASHVSPEVSDTAWASAIAEP--------------SSLTSRPAETTLE 185          
BLAST of CN185435 vs. ExPASy Swiss-Prot
Match: ARFG3_BOVIN (ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.090e-31
Identity = 70/130 (53.85%), Postives = 88/130 (67.69%), Query Frame = 3
Query:  108 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEA 494
            M   +  D   +F++L++   NK+CFDC AKNP+WAS+TYG+FLCIDCS  HRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG  D     AKY SRAA+LY     +E  K++A +A
Sbjct:    1 MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHG-CDTNDTNAKYNSRAAQLY-----RERIKALASQA 124          
The following BLAST results are available for this feature:
BLAST of CN185435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
AGD8_ARATH2.094e-8367.86Probable ADP-ribosylation factor GTPase-activating... [more]
AGD10_ARATH1.270e-8071.49ADP-ribosylation factor GTPase-activating protein ... [more]
AGD9_ARATH1.404e-7967.41Probable ADP-ribosylation factor GTPase-activating... [more]
ARFG2_HUMAN2.773e-3537.40ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_BOVIN8.067e-3538.78ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_PONAB1.288e-3257.39ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_MOUSE2.869e-3257.39ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_XENTR3.747e-3240.67ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_PONAB6.392e-3240.47ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_BOVIN1.090e-3153.85ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185435 ID=CN185435; Name=CN185435; organism=Citrus sinensis; type=EST; length=803bp
GAGGAGGTTCATAATCTCATATTCTCGTTCAGGAAAAAATCAAAATCAAA
ATTTACAATCTTGGGGTTTCGTTTTTCGTAATTTTTATTTCATAAAATTC
TTTCTCGATGGCTTCCGATAATTTGACCGATAAGAACCTTGTTTTCAGAA
AACTGAAAGCAAAATCGGAAAACAAGATGTGTTTTGATTGTAATGCTAAG
AACCCGACGTGGGCCTCGGTGACTTACGGGATCTTTCTCTGCATCGATTG
CTCTGCCGTTCACCGTAGTCTCGGTGTCCACATCAGCTTCGTTAGGTCAA
CAAATTTAGACTCATGGAGTGCTGAGCAGTTGAAAATGATGGTGTATGGA
GGAAACAACCGTGCACAAGTTTTCTTTAAGCAGCATGGATGGACAGATGG
AGGCAAAATTGAGGCTAAGTATACCTCAAGAGCTGCTGAATTATACAAGC
AGATTCTTGCGAAAGAAGTTGCTAAAAGTATGGCAGAAGAGGCAGGCTTG
CCATCATCACCTGTTGCCTCGCAGCCGGCACAAGCAGCTAATGCACTTCC
AGATGTTAAGATCCAGGATGCTCCTAAAGAAAATTATCAAGGAAGGCAAG
AAACTCAAGACGCTCCTGGTTCGCCAAAAGTTTCTCATACAGTTCTTACT
AGTACCGTCAAAAAACCACTTGGTGCAAAGAAATCAGGGAAGACTGGGGG
TCTAGGTGCCCGAAAGCTGACTTCAAAGCCAAGTGAAAGTCTATATGAGC
AGAAGCCTGAAGAACCTTCTGTCCCTATTTCTTCCTCAACCAGCAACACA
TCG
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