CN185434

Overview
NameCN185434
Unique NameCN185434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185434 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.201e-60
Identity = 117/174 (67.24%), Postives = 147/174 (84.48%), Query Frame = -2
Query:  319 SSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGS--SKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL 834
            SS    FASRFEY D++QS   S GG QVL+HVAPPKSSSFF+D+GMD+ F KKS S  SK Q++E+DEARKKF+NAKSISS+Q+FGDQN + D++++ +LQKF+GSASISSAD +GHD D++++D+ ASDLINRLSFQAQQD+SSL NIAGET KKL +LAS + +DIQDR+L
Sbjct:  240 SSAGSSFASRFEYNDDLQSGGQSVGGTQVLNHVAPPKSSSFFSDFGMDSSFPKKSSSNSSKSQVEESDEARKKFTNAKSISSAQYFGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLSSLVNIAGETKKKLGTLASGIFSDIQDRML 413          
BLAST of CN185434 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.820e-56
Identity = 111/176 (63.07%), Postives = 143/176 (81.25%), Query Frame = -2
Query:  319 NTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSS--KVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL 840
            +TS+    FASRFEY D+ QS   S  G +VLSHVAPPKSS+FF ++GMD+ F KKS SS  K Q++ETDEARKKFSNAKSISS+QFFG+QN   D+D++ +LQKFSGSA+ISS+DLFGH  D++++D+ ASDLINR+SFQAQQD+SS+ N+A ET  KL + ASS+ +D+QDR+L
Sbjct:  229 DTSAAGSSFASRFEYFDDEQSGGQS--GTRVLSHVAPPKSSNFFNEFGMDSAFPKKSSSSSSKAQVEETDEARKKFSNAKSISSAQFFGNQNRDADLDSKATLQKFSGSAAISSSDLFGHGPDDSNIDITASDLINRISFQAQQDMSSIANLAEETKNKLGTFASSIFSDLQDRML 402          
BLAST of CN185434 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 107/169 (63.31%), Postives = 129/169 (76.33%), Query Frame = -2
Query:  346 NTSSVSLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNG--FQKK--SGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSL 840
            +  S    F+SRF+Y DNVQ+ E     PQV+SHVAPPKSS FF +    NG  FQKK  + SSK+QIQETDEARKKF+NAKSISS+Q+FG+ NNS D++ + SL+KFSGS++ISSADLFG    +  LDL A DL+NRLS QAQQDISSLKN+A ET KKL S+ASSL
Sbjct:  226 SAKSARSSFSSRFDYADNVQNRE-DYMSPQVVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQIQETDEARKKFTNAKSISSAQYFGNDNNSADLEAKSSLKKFSGSSAISSADLFGDGDGDFPLDLTAGDLLNRLSLQAQQDISSLKNMAEETKKKLGSVASSL 393          
BLAST of CN185434 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  325 IQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDR 651
            ++ TDEA+KKF N K+ISS  +FG Q  + D +T+  L++ S S+SISSADLF      A+ + + S ++      AQ     ++++AG    KLS  A+ ++T IQDR
Sbjct:  411 VENTDEAQKKFGNVKAISSDMYFGRQAQA-DYETRARLERLSASSSISSADLFEEQRKQAAGNYSLSSVLPNAPDMAQFK-QGVRSVAG----KLSVFANGVVTSIQDR 513          
BLAST of CN185434 vs. ExPASy Swiss-Prot
Match: ARFG3_MACFA (ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = -2
Query:  325 IQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDR 651
            ++ TDEA+KKF N K+ISS  +FG Q  + D +T+  L++ S S+SISSADLF      A+ + + S+++      AQ     ++++AG    KLS  A+ ++T IQDR
Sbjct:  411 VENTDEAQKKFGNVKAISSDMYFGRQAQA-DYETRARLERLSASSSISSADLFEEQRKQAAGNYSLSNVLPSAPNMAQFK-QGVRSVAG----KLSVFANGVVTSIQDR 513          
BLAST of CN185434 vs. ExPASy Swiss-Prot
Match: ARFG3_HUMAN (ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.759e-11
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  325 IQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDR 651
            ++ TDEA+KKF N K+ISS  +FG Q+ + D +T+  L++ S S+SISSADLF       + + + S ++      AQ     ++++AG    KLS  A+ ++T IQDR
Sbjct:  411 VENTDEAQKKFGNVKAISSDMYFGRQSQA-DYETRARLERLSASSSISSADLFEEPRKQPAGNYSLSSVLPNAPDMAQFK-QGVRSVAG----KLSVFANGVVTSIQDR 513          
The following BLAST results are available for this feature:
BLAST of CN185434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AGD8_ARATH1.201e-6067.24Probable ADP-ribosylation factor GTPase-activating... [more]
AGD9_ARATH6.820e-5663.07Probable ADP-ribosylation factor GTPase-activating... [more]
AGD10_ARATH8.927e-4863.31ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_PONAB7.894e-1239.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MACFA7.894e-1239.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_HUMAN1.759e-1138.53ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185434 ID=CN185434; Name=CN185434; organism=Citrus sinensis; type=EST; length=841bp
CTTTTTTTTTTCAAGTTCCCTGGCCACAGCGCTACAAATATTATATTTAT
ATATATTTTTATAGGTTCCTTGGTTTACAACGAAGCCACGAAGGTACATA
ATATTGAATCGATTCACTAAATGAAAGGCACATGAAACTAGTCTCAAAAC
AAACACTGCTGAAACCACAATAAAAAGCCCAGTCGGTAGTATGCCAGCAG
AATTCTAAAATTTTATTTGTCTTCCAAAAGAATTTTATGATCAAACTCAT
TTTACATTTCCTACACAAGATGTAGGCTGGTAAATGTAACAAACTCCAGA
CATATTCGAAGATTTTCAGAGTATTCTGTCTTGAATATCTGTTATCAGAC
TTGACGCCAAGGAGCTAAGTTTCTTTCCAGTCTCTCCCGCAATGTTCTTC
AGAGAAGAGATATCTTGTTGTGCCTGGAATGAGAGTCTGTTGATGAGGTC
ACTAGCAGCAAGATCAAGTGAGGCATTGTCAGAGTCATGACCAAACAGAT
CAGCACTAGAGATCGATGCTGAACCTGAGAACTTTTGCAAAGAAACTTGA
GTATCCATGTCAATAGAGTTGTTCTGATCCCCAAAAAATTGGGATGATGA
AATAGATTTTGCATTAGAGAACTTCTTCCTTGCTTCATCAGTTTCTTGAA
TTTGTACTTTTGAGGAGCCGGACTTCTTTTGAAAACCATTGTCCATTCCA
TAATCAGCAAAGAAGCTTGACGACTTTGGTGGAGCTACATGGCTAAGCAC
TTGTGGACCACCAGAACTCAACTCGGAAGATTGGACATTATCCACATACT
CAAAGCGAGAAGCAAAGGGCAAACTAACTGACGATGTGTTG
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