DC887863

Overview
NameDC887863
Unique NameDC887863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887863_ssr471 microsatellite DC887863_ssr471:471..482. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5644 contig Csv1_Contig5644:56..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL222_ARATH (60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.494e-40
Identity = 82/108 (75.93%), Postives = 91/108 (84.26%), Query Frame = -1
Query:  121 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 444
            +F IDC KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSVT+TREK+KITVT+D  FS             KHNVRDWLRVIA+NKDR++YELRYFNIAENEGEEED
Sbjct:   17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED 124          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL223_ARATH (60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.157e-39
Identity = 80/108 (74.07%), Postives = 90/108 (83.33%), Query Frame = -1
Query:  121 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 444
            +F IDC KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSV++TREK+KITVT+D  FS             KHNVRDWLRVIA+NKDR++YELRYFNIAENE EEED
Sbjct:   17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEAEEED 124          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL221_ARATH (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = -1
Query:  121 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 444
            +FVIDC KPV+D I++IA+LEKFLQERIKV GKAGALG+SV++TR   KI V ++SNFS             K+N+RDWLRVIASNKD++VYE+RYF I +     E+
Sbjct:   19 SFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDEVASYEE 126          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_RAT (60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 9.729e-24
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS             K+N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_PIG (60S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS             K+N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_MOUSE (60S ribosomal protein L22 OS=Mus musculus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS             K+N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_MACFA (60S ribosomal protein L22 OS=Macaca fascicularis GN=RPL22 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS             K+N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_HUMAN (60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS             K+N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_ICTPU (60S ribosomal protein L22 OS=Ictalurus punctatus GN=rpl22 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 2.167e-23
Identity = 60/108 (55.56%), Postives = 73/108 (67.59%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   V++ R K+KITVTSD  FS             K+N+RDWLRV+A+ K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVTSDIPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEEEED 126          
BLAST of DC887863 vs. ExPASy Swiss-Prot
Match: RL22_CHICK (60S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.828e-23
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = -1
Query:  121 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 441
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS             K+N+RDWLRV+A++K+   YELRYF I ++E EEE+
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEEE 126          
The following BLAST results are available for this feature:
BLAST of DC887863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL222_ARATH1.494e-4075.9360S ribosomal protein L22-2 OS=Arabidopsis thalian... [more]
RL223_ARATH2.157e-3974.0760S ribosomal protein L22-3 OS=Arabidopsis thalian... [more]
RL221_ARATH1.713e-2858.33Putative 60S ribosomal protein L22-1 OS=Arabidopsi... [more]
RL22_RAT9.729e-2455.5660S ribosomal protein L22 OS=Rattus norvegicus GN=... [more]
RL22_PIG1.660e-2355.5660S ribosomal protein L22 OS=Sus scrofa GN=RPL22 P... [more]
RL22_MOUSE1.660e-2355.5660S ribosomal protein L22 OS=Mus musculus GN=Rpl22... [more]
RL22_MACFA1.660e-2355.5660S ribosomal protein L22 OS=Macaca fascicularis G... [more]
RL22_HUMAN1.660e-2355.5660S ribosomal protein L22 OS=Homo sapiens GN=RPL22... [more]
RL22_ICTPU2.167e-2355.5660S ribosomal protein L22 OS=Ictalurus punctatus G... [more]
RL22_CHICK4.828e-2354.6360S ribosomal protein L22 OS=Gallus gallus GN=RPL2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887863 EIC Citrus sinensis cDNA clone EIC1015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887863 ID=DC887863; Name=DC887863; organism=Citrus sinensis; type=EST; length=501bp
TGATGTCTCTAAACATTCAAACAAGTCCACAGATTTGATCGCAGGAGAAA
AAAAGAAAAAAGAGCTAGAACAAGTAATCAGAATAGATATAATATGAGGA
AATACTGAAATGGATCTTCAGTCTTCCTCCTCTCCCTCATTCTCAGCAAT
GTTGAAGTATCGCAGCTCATAGACACTTCGGTCCTTGTTTGAAGCAATCA
CTCGGAGCCAATCTCTTACATTGTGTTTCTTCAAGTACTTCTTGGTCAAA
TATTTAAGATACCTCTTAGAGAAGTTGCTGTCAGAAGTGACGGTGATCTT
GGTCTTCTCACGGGTGACGGTAACTGAATCCCCAAGGGCACCAGCCTTGC
CGCCGACCTTGATCCGCTCCTGGAGGAACTTTTCCAAGGACGCAATGTCC
ATGATTTTGTCCTCCACAGGCTTCCCGCAGTCTATCACGAAGGTCGCTCC
CTTTTTCTTCCCCTTCACCCCTGCTGCTGCTGCTCCGCGACTCATTTTCC
C
back to top