DC887861

Overview
NameDC887861
Unique NameDC887861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887861_ssr7 microsatellite DC887861_ssr7:7..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8591 contig Csv1_Contig8591:620..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887861 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.677e-11
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = -3 
Query:  160 VFSAGNHKWKIRLYPMGNGFGDGDHLSLFLALADSA--VEAVKVYADYSLRILDQVGEKHK-SFQGKAWFLAPTFALGSQRFLSMSKLNEPETGFLVNDVCLVEAEVTV 477
            VF  G +KW+I ++P GN     DHLS++L +AD+A        Y+ +SL +++QV  ++    + +  F A     G   F+ +S+L EP  G+LVND  L+EAEV V
Sbjct:   75 VFVVGGYKWRILIFPKGNNV---DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAV 180
[Close]
BLAST of DC887861 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = -3 
Query:  160 VFSAGNHKWKIRLYPMGNGFGDGDHLSLFLALADSAVEAV--KVYADYSLRILDQVGEKHK-SFQGKAWFLAPTFALGSQRFLSMSKLNEPETGFLVNDVCLVEAEVTV 477
            VF  G +KW+I ++P GN     DHLS++L ++D+A        YA +SL +++Q+  ++    + +  F A     G   F+ +S+L +P  G+LVND  LVEAEV V
Sbjct:   76 VFVVGGYKWRILIFPKGNNV---DHLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAV 181
The following BLAST results are available for this feature:
BLAST of DC887861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP13_ARATH1.677e-1137.61Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH8.325e-1136.70Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionDC887861 EIC Citrus sinensis cDNA clone EIC1012 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887861 ID=DC887861; Name=DC887861; organism=Citrus sinensis; type=EST; length=482bp
ACAAGCTATATATATATATTTCATAAGAACAAAGCTATATTTTGGAAAAC
CACTAGAGAAATTAATATCCAACTTTAGCCAGGCAGTCAGCATCACACAG
TAGAAGAACCGAATTGGAGGACAATTAATTACTTGTTATAATGGCTCGGA
AACTCCAAGCACAGTGACCTCAGCTTCCACCAGGCATACGTCATTCACTA
GAAACCCAGTCTCTGGCTCATTTAACTTACTCATCGAAAGGAATCTTTGA
GAGCCCAAGGCAAAGGTTGGTGCAAGGAACCAGGCTTTACCTTGAAAAGA
TTTATGTTTTTCCCCCACTTGATCTAAAATTCGCAATGAATAGTCTGCAT
ATACTTTAACAGCCTCAACTGCAGAATCTGCCAAAGCCAAGAACAGAGAA
AGATGATCGCCATCACCGAAGCCATTTCCCATGGGATAGAGCCGTATCTT
CCATTTGTGATTTCCAGCACTGAACACTTGCG
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