DC887856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1) HSP 1 Score: 335.495 bits (859), Expect = 1.244e-91 Identity = 163/199 (81.91%), Postives = 179/199 (89.95%), Query Frame = -1 Query: 5 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 601 +D+R EPGPKVWGSLLGSCRIH NVELAERAS+RLF LEP NAGNYVLLAD+YA A MWDEVKRVK+LLE RGLQK+PGR +EV+RKMYSFVSVDEFNP EQ+HA L+ L+ +MKEKGY+PQTK VLY+L+ EEKERIVLGHSEKLA+AFGLINTSKGE IRITKNLRLCEDCH FTKFISKF KEILVRDVNRFH Sbjct: 446 QDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFH 644
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 2.293e-53 Identity = 98/199 (49.25%), Postives = 141/199 (70.85%), Query Frame = -1 Query: 5 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 601 E++ I P +WG+LL CRIH +V+LAE+ ++++FELEP N G YVL+A++YA A+ W++VKR+++ + RGL+K PG S IE+K ++ FV+ D NP+ E + A L + A M E+GY P TK L D + EKE + GHSEKLA+A G+I++ G+ IR+TKNLR+C DCH KF+SK +EI++RD NRFH Sbjct: 660 ENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFH 858
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 3.911e-53 Identity = 94/200 (47.00%), Postives = 143/200 (71.50%), Query Frame = -1 Query: 2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601 +++ EP VWG+LL SCR+ NV+LAE A+++LF LEP N G YVLL+++YAA MW EV ++ +E+ GL+K PG S I+VK ++Y+ ++ D+ +PQ +Q+ + +S EM++ G+ P L+D++ +E+E+++ GHSEKLAV FGL+NT G +++ KNLR+C DCH+ KFIS +A +EI +RD NRFHH Sbjct: 549 KEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHH 748
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 1.258e-51 Identity = 91/200 (45.50%), Postives = 145/200 (72.50%), Query Frame = -1 Query: 2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601 +++ EP +WG+LLG+ R+H N ELAE A+ ++F +EP N+G YVLL+++YA++ W +V +++ + +G++KVPG S IE++ K ++F DEF+P+ +++ A L L MK+ GYV +T VVL+D++ EEKER+V HSE+LAVA+G++ S G IR+ KNLR+CEDCH+ K++++ + I++RD NRFHH Sbjct: 570 KNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHH 769
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2) HSP 1 Score: 200.675 bits (509), Expect = 4.781e-51 Identity = 93/200 (46.50%), Postives = 140/200 (70.00%), Query Frame = -1 Query: 2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601 + + ++P +WG+LL +CR+H NV+L + AS+ LFE+EP + G +VLL+++YA+A W+ V ++ + +GL+K PG S +EV K+ F + ++ +P +E+++ L L A++K GYVP + VL D++ +EKE I++ HSE+LA+AF LI T TIRI KNLR+C DCHS TKFISK +EI+VRD NRFHH Sbjct: 612 KSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHH 811
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 3.099e-50 Identity = 93/198 (46.97%), Postives = 137/198 (69.19%), Query Frame = -1 Query: 2 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 595 ++++P +W SLL +CRIH NVELAE + RLFEL+ +N G Y+LL+ +YA A W +V+RV+ +++ RGL K PG S +E+ +++ F+ DE +PQ E+++ L L+ ++ E GYV T V +D+D EEKE + HSEKLA+AFG++NT G T+ + KNLR+C DCH+ K ISK ++E +VRD RFHH Sbjct: 450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHH 647
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2) HSP 1 Score: 197.208 bits (500), Expect = 5.286e-50 Identity = 93/188 (49.47%), Postives = 137/188 (72.87%), Query Frame = -1 Query: 5 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 568 W SLLG+ RIH N+E+ E A++ L +LEP A +YVLLA++Y++A +WD+ V+R ++ +G++K PG S IE +++ FV+ D +PQ E+L L L M+++GYVP T VL++++ +EKE ++ GHSEKLA+AFG++NTS G IR+ KNLR+C DCH TKFISK ++EI++RDV RFH Sbjct: 690 WSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFH 877
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 9.016e-50 Identity = 92/196 (46.94%), Postives = 142/196 (72.45%), Query Frame = -1 Query: 2 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 589 ++P V+G++LG+C+IH NV AE+A++RLFEL P + G +VLLA++Y AA MW++V +V+ + +GL+K PG S +E+K +++SF S +P ++++A L L +KE GYVP T +VL ++ + KE+++ HSEKLA++FGL+NT+ G TI + KNLR+C DCH+ TK+IS +EI+VRD+ RFHH Sbjct: 603 VKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHH 797
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.178e-49 Identity = 89/196 (45.41%), Postives = 135/196 (68.88%), Query Frame = -1 Query: 2 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 589 +EP VW +LL SC +H N+ELAE+ ++++F ++ N G YVL+ ++YA+ W E+ +++ + +GL+K P S IE+K K + FVS D +P ++++ L + +M+++GYV T VL+D+D E K ++ GHSE+LAVAFG+INT G TIR+TKN+R+C DCH KFISK +EI+VRD +RFHH Sbjct: 508 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHH 703
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.178e-49 Identity = 91/194 (46.91%), Postives = 137/194 (70.62%), Query Frame = -1 Query: 5 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 586 +P V GSLLG+CR+H +V++ E +RL E+EP NAGNYV+L+++YA+A W +V V+ ++ + + K PGRS I+ ++ ++ F + D +P+ E++ A + +S +MK+ GYVP VLYD+D E+KE+++LGHSEKLA+ FGLI T +G IR+ KNLR+C DCH+F K SK +E+ +RD NRFH Sbjct: 422 KPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFH 615 The following BLAST results are available for this feature:
BLAST of DC887856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887856 ID=DC887856; Name=DC887856; organism=Citrus sinensis; type=EST; length=601bpback to top |