DC887856

Overview
NameDC887856
Unique NameDC887856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7391 contig Csv1_Contig7391:196..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.244e-91
Identity = 163/199 (81.91%), Postives = 179/199 (89.95%), Query Frame = -1
Query:    5 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 601
            +D+R EPGPKVWGSLLGSCRIH NVELAERAS+RLF LEP NAGNYVLLAD+YA A MWDEVKRVK+LLE RGLQK+PGR  +EV+RKMYSFVSVDEFNP  EQ+HA L+ L+ +MKEKGY+PQTK VLY+L+ EEKERIVLGHSEKLA+AFGLINTSKGE IRITKNLRLCEDCH FTKFISKF  KEILVRDVNRFH
Sbjct:  446 QDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFH 644          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.293e-53
Identity = 98/199 (49.25%), Postives = 141/199 (70.85%), Query Frame = -1
Query:    5 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 601
            E++ I P   +WG+LL  CRIH +V+LAE+ ++++FELEP N G YVL+A++YA A+ W++VKR+++ +  RGL+K PG S IE+K ++  FV+ D  NP+ E + A L  + A M E+GY P TK  L D +  EKE  + GHSEKLA+A G+I++  G+ IR+TKNLR+C DCH   KF+SK   +EI++RD NRFH
Sbjct:  660 ENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFH 858          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 3.911e-53
Identity = 94/200 (47.00%), Postives = 143/200 (71.50%), Query Frame = -1
Query:    2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601
            +++  EP   VWG+LL SCR+  NV+LAE A+++LF LEP N G YVLL+++YAA  MW EV  ++  +E+ GL+K PG S I+VK ++Y+ ++ D+ +PQ +Q+   +  +S EM++ G+ P     L+D++ +E+E+++ GHSEKLAV FGL+NT  G  +++ KNLR+C DCH+  KFIS +A +EI +RD NRFHH
Sbjct:  549 KEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHH 748          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.258e-51
Identity = 91/200 (45.50%), Postives = 145/200 (72.50%), Query Frame = -1
Query:    2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601
            +++  EP   +WG+LLG+ R+H N ELAE A+ ++F +EP N+G YVLL+++YA++  W +V +++  +  +G++KVPG S IE++ K ++F   DEF+P+ +++ A L  L   MK+ GYV +T VVL+D++ EEKER+V  HSE+LAVA+G++  S G  IR+ KNLR+CEDCH+  K++++   + I++RD NRFHH
Sbjct:  570 KNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHH 769          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 4.781e-51
Identity = 93/200 (46.50%), Postives = 140/200 (70.00%), Query Frame = -1
Query:    2 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 601
            + + ++P   +WG+LL +CR+H NV+L + AS+ LFE+EP + G +VLL+++YA+A  W+ V  ++ +   +GL+K PG S +EV  K+  F + ++ +P +E+++  L  L A++K  GYVP  + VL D++ +EKE I++ HSE+LA+AF LI T    TIRI KNLR+C DCHS TKFISK   +EI+VRD NRFHH
Sbjct:  612 KSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHH 811          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.099e-50
Identity = 93/198 (46.97%), Postives = 137/198 (69.19%), Query Frame = -1
Query:    2 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 595
            ++++P   +W SLL +CRIH NVELAE +  RLFEL+ +N G Y+LL+ +YA A  W +V+RV+ +++ RGL K PG S +E+  +++ F+  DE +PQ E+++  L  L+ ++ E GYV  T  V +D+D EEKE  +  HSEKLA+AFG++NT  G T+ + KNLR+C DCH+  K ISK  ++E +VRD  RFHH
Sbjct:  450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHH 647          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 5.286e-50
Identity = 93/188 (49.47%), Postives = 137/188 (72.87%), Query Frame = -1
Query:    5 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 568
            W SLLG+ RIH N+E+ E A++ L +LEP  A +YVLLA++Y++A +WD+   V+R ++ +G++K PG S IE   +++ FV+ D  +PQ E+L   L  L   M+++GYVP T  VL++++ +EKE ++ GHSEKLA+AFG++NTS G  IR+ KNLR+C DCH  TKFISK  ++EI++RDV RFH
Sbjct:  690 WSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFH 877          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.016e-50
Identity = 92/196 (46.94%), Postives = 142/196 (72.45%), Query Frame = -1
Query:    2 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 589
            ++P   V+G++LG+C+IH NV  AE+A++RLFEL P + G +VLLA++Y AA MW++V +V+  +  +GL+K PG S +E+K +++SF S    +P  ++++A L  L   +KE GYVP T +VL  ++ + KE+++  HSEKLA++FGL+NT+ G TI + KNLR+C DCH+ TK+IS    +EI+VRD+ RFHH
Sbjct:  603 VKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHH 797          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.178e-49
Identity = 89/196 (45.41%), Postives = 135/196 (68.88%), Query Frame = -1
Query:    2 IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 589
            +EP   VW +LL SC +H N+ELAE+ ++++F ++  N G YVL+ ++YA+   W E+ +++  +  +GL+K P  S IE+K K + FVS D  +P  ++++  L  +  +M+++GYV  T  VL+D+D E K  ++ GHSE+LAVAFG+INT  G TIR+TKN+R+C DCH   KFISK   +EI+VRD +RFHH
Sbjct:  508 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHH 703          
BLAST of DC887856 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.178e-49
Identity = 91/194 (46.91%), Postives = 137/194 (70.62%), Query Frame = -1
Query:    5 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFNPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFH 586
            +P   V GSLLG+CR+H +V++ E   +RL E+EP NAGNYV+L+++YA+A  W +V  V+ ++  + + K PGRS I+ ++ ++ F + D  +P+ E++ A +  +S +MK+ GYVP    VLYD+D E+KE+++LGHSEKLA+ FGLI T +G  IR+ KNLR+C DCH+F K  SK   +E+ +RD NRFH
Sbjct:  422 KPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFH 615          
The following BLAST results are available for this feature:
BLAST of DC887856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
PP265_ARATH1.244e-9181.91Pentatricopeptide repeat-containing protein At3g46... [more]
PP320_ARATH2.293e-5349.25Pentatricopeptide repeat-containing protein At4g18... [more]
PPR53_ARATH3.911e-5347.00Pentatricopeptide repeat-containing protein At1g20... [more]
PP301_ARATH1.258e-5145.50Pentatricopeptide repeat-containing protein At4g02... [more]
PP348_ARATH4.781e-5146.50Pentatricopeptide repeat-containing protein At4g33... [more]
PP258_ARATH3.099e-5046.97Pentatricopeptide repeat-containing protein At3g26... [more]
PP285_ARATH5.286e-5049.47Pentatricopeptide repeat-containing protein At3g57... [more]
PPR32_ARATH9.016e-5046.94Pentatricopeptide repeat-containing protein At1g11... [more]
PP251_ARATH1.178e-4945.41Putative pentatricopeptide repeat-containing prote... [more]
PP227_ARATH1.178e-4946.91Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionDC887856 EIC Citrus sinensis cDNA clone EIC1003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887856 ID=DC887856; Name=DC887856; organism=Citrus sinensis; type=EST; length=601bp
AATGGTGAAACCGGTTAACATCGCGAACCAGAATCTCTTTATTGGCAAAC
TTGGAAATGAATTTTGTAAAAGAATGGCAATCCTCACATAACCTCAAGTT
CTTTGTGATCCGAATTGTCTCCCCTTTGCTAGTGTTTATGAGTCCAAAAG
CAACTGCTAGTTTTTCGCTATGGCCTAATACAATACGTTCCTTTTCTTCT
GCATCAAGGTCGTAAAGCACAACTTTGGTTTGTGGCACATAGCCCTTCTC
CTTCATCTCGGCTGACAGATTGATTAACAGTGCATGCAGCTGTTCAAACT
GCGGGTTGAACTCATCAACGGACACAAATGAGTACATTTTCCTCTTAACT
TCAATCCTACTTCGACCTGGGACTTTCTGCAGACCCCTTGCTTCAAGAAG
CCTTTTCACTCTTTTTACCTCATCCCACATATCAGCTGCTGCATATACAT
CAGCTAGAAGTACATAATTCCCTGCATTTGTAGGCTCAAGCTCAAAAAGC
CTTTTGCTTGCTCTCTCAGCAAGCTCAACATTACAATGAATCCGACACGA
TCCAAGCAATGAACCCCAAACCTTAGGTCCCGGTTCAATTCTCAAATCTT
C
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