DC887855

Overview
NameDC887855
Unique NameDC887855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7490 contig Csv1_Contig7490:329..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887855 vs. ExPASy Swiss-Prot
Match: FB84_ARATH (F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.799e-33
Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = -3 
Query:  180 LRAAEGGYVRAMYNTXLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 506
            L+AAEGGYVRAMYN  LCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V+YLELA R GE AA  VK V+ QQLSAT    +   A+   ++WR +P
Sbjct:  236 LKAAEGGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSVLYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348
The following BLAST results are available for this feature:
BLAST of DC887855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB84_ARATH1.799e-3363.72F-box protein At1g70590 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionDC887855 EIC Citrus sinensis cDNA clone EIC1001 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887855 ID=DC887855; Name=DC887855; organism=Citrus sinensis; type=EST; length=508bp
GCACGTATAATATTTATAATTTTTCAAAAACAGGATCAAAAGGGGAAGGG
AAAAGATAAAAGAGGACATAGTATGTACTAACGGAGAAAACTAATGGGAA
GAAAAAAAAAGCGTAAAGGAATTTAGTATAATAGCTATAAAGCCTGTAAT
CCATCATCAGGTCAGACTCAGTGAAGGGAAGGCATAGCACGCCAACTGTC
GACGACTAACATGGCACGATCACGTGAAGTAGCTGACAGTTGTTGGAGAA
TTACATTCTTGACATGATCTGCTGCTGTTTCACCAGCACGTGTTGCAAGT
TCTAGGTAAACCACAGCTTTCATCATCTCTCCTTCCGTAAATAGACCGAG
CCCATGCTCAAGTTGAGCTTTGCCGTGACCACAATCAGCTGCTCTTTTCA
TCCATTTCCTCGCTTGTCTGTGACTCAGTGGCAAGCCTTCCCCAAAGGAA
TAGCAAAGANAGGTGTTGTACATAGCACGCACATAGCCACCTTCAGCAGC
TCTTAAAT
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