CN185411

Overview
NameCN185411
Unique NameCN185411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185411 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 2 
Query:   59 YSFTFINAFTFNIQNNCAYTVWAAASPGGGKQLEPKSSWTTDVNPGSNKPARIWAPTKCTF----RSACKVVFC 268
            Y     +A TF+I N C YTVWAAASPGGG+QL    SW+ +VNPG+ + ARIW  T C F    R  C+   C
Sbjct:   18 YFVAVTHAATFDIVNQCTYTVWAAASPGGGRQLNSGQSWSINVNPGTVQ-ARIWGRTNCNFDGSGRGNCETGDC 90
[Close]
BLAST of CN185411 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:   59 YSFTFINAFTFNIQNNCAYTVWAAASPGGGKQLEPKSSWTTDVNPGSNKPARIWAPTKCTF----RSACKVVFC 268
            Y     +A TF+I N C YTVWAAASPGGG++L+   SW+ +VNPG+ + ARIW  T C F    R  C+   C
Sbjct:   18 YFVAVTHAATFDIVNKCTYTVWAAASPGGGRRLDSGQSWSINVNPGTVQ-ARIWGRTNCNFDGSGRGNCETGDC 90
[Close]
BLAST of CN185411 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 2 
Query:   53 ALYSFTFINAFTFNIQNNCAYTVWAAASPGGGKQLEPKSSWTTDVNPGSNKPARIWAPTKCTFRSA 250
            AL   +   A TF I N C+YTVWAAASPGGG++L+   SW  DV  G+ K ARIW  T C F S+
Sbjct:   13 ALLLISTATAATFEILNQCSYTVWAAASPGGGRRLDAGQSWRLDVAAGT-KMARIWGRTNCNFDSS 77
[Close]
BLAST of CN185411 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 2 
Query:   59 YSFTFINAFTFNIQNNCAYTVWAAASPGGGKQLEPKSSWTTDVNPGS-NKPARIWAPTKCTFRSA 250
            + FT     TFNI NNC +TVWAAA PGGGK+L+   +W   +NPG+  K AR+W  T C F  A
Sbjct:   17 FLFTCARGATFNIINNCPFTVWAAAVPGGGKRLDRGQNWI--INPGAGTKGARVWPRTGCNFDGA 79
The following BLAST results are available for this feature:
BLAST of CN185411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PRR2_TOBAC5.415e-1350.00Pathogenesis-related protein R minor form OS=Nicot... [more]
PRR1_TOBAC9.236e-1348.65Pathogenesis-related protein R major form OS=Nicot... [more]
OSL3_ARATH4.584e-1253.03Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
TLP_ACTDE3.880e-1150.77Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001E19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185411 ID=CN185411; Name=CN185411; organism=Citrus sinensis; type=EST; length=489bp
ATGATCAACTTTAAAGCCATTCCTTTAATTACCCTTCATAATTCTCCAGA
TTGCTCTCTACTCCTTCACCTTCATCAATGCATTCACCTTTAACATCCAA
AACAACTGCGCCTACACTGTCTGGGCCGCAGCCTCACCCGGCGGGGGCAA
GCAGCTGGAACCGAAATCATCCTGGACTACTGATGTGAATCCCGGAAGCA
ATAAGCCAGCTCGCATATGGGCTCCAACCAAGTGCACATTCCGCAGCGCC
TGCAAGGTTGTGTTCTGTCCTTAACGCAAATAAAATTTAGTAGCATTTAC
ATATATAGTTAACTTTTGTGTGGCATCGTAGTAGAGTTCTATTCGTACTA
TCAATGTAATATAATTACTTTTTAAGTTATTGGTCTGTACTCGCGTGTGT
GCACTGCACTCGTGCTGAGTGTTGGGTGAGCTACTTATAAATTTTTTGAC
TTATTATCATTTTACTACACCTGAAAAAAAAAAAAAAAA
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