DC887849

Overview
NameDC887849
Unique NameDC887849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887849 vs. ExPASy Swiss-Prot
Match: LEUNG_ARATH (Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 2.416e-14
Identity = 27/42 (64.29%), Postives = 38/42 (90.48%), Query Frame = -1 
Query:  225 PSYPTLMVIGGYQSLELWNMAENKCMTIAAHDCVISALAISS 350
            P+YP+L+VIG YQSLELWNM+ENK MT+ AH+ +I++LA+S+
Sbjct:  872 PAYPSLLVIGCYQSLELWNMSENKTMTLPAHEGLITSLAVST 913

HSP 2 Score: 35.4242 bits (80), Expect = 2.416e-14
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = -2 
Query:  173 SPVTGMVASASHDKSVKIWK 232
            S  TG+VASASHDK VK+WK
Sbjct:  912 STATGLVASASHDKLVKLWK 931
The following BLAST results are available for this feature:
BLAST of DC887849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LEUNG_ARATH2.416e-1464.29Transcriptional corepressor LEUNIG OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionDC887849 EIC Citrus sinensis cDNA clone EIC0994 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887849 ID=DC887849; Name=DC887849; organism=Citrus sinensis; type=EST; length=350bp
AAAAGGGGGGAAAAAAGTCATCAACAATATCGTGATAAATAGATAAAGCA
AAATAAAATACAAGGGCAGATAATCTTTTCTTGTGTTTGAATTTTTGTTG
AATGATGTGCGTGAAAAGTCAGCAGCCTTTATACTGGAGGATTTGAAGCA
CCAAAAAGCAAGCGACAGGTTATTTCCAGATCTTAACAGATTTGTCATGA
CTCGCAGAGGCAACCATCCCAGTTACTGGAGATTGCTAGGGCTGATATCA
CACAATCATGTGCCGCGATTGTCATACACTTATTCTCAGCCATATTCCAT
AACTCCAGTGACTGGTAGCCTCCAATGACCATGAGGGTGGGATAGCTTGG
back to top